←Back to structures
SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00210
Bact-VirSR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00210
Identity
- Kingdom:
- phage
Quality
84.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-57
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wp1B01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.79 | 69.0 | 4.12e-01 | 96.3% | 14.2% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.78 | 40.0 | 3.30e-01 | 74.1% | 30.0% |
| 2oap202 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.75 | 45.0 | 2.81e-01 | 79.6% | 11.9% |
| 5eriA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 45.0 | 3.21e-01 | 79.6% | 22.2% |
| 3venA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.71 | 55.0 | 3.62e-01 | 83.3% | 54.4% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.70 | 36.0 | 2.97e-01 | 70.4% | 29.2% |
| 3rhtA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.68 | 40.0 | 2.58e-01 | 72.2% | 12.7% |
| 4hn3A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.66 | 47.0 | 2.96e-01 | 79.6% | 13.9% |
| 7l9pK01 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.63 | 41.0 | 3.12e-01 | 74.1% | 30.3% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.63 | 45.0 | 4.04e-01 | 74.1% | 64.8% |
| 4arvA02 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.62 | 46.0 | 3.49e-01 | 79.6% | 62.7% |
| 1oi2A02 | 3.30.1180.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 | 0.61 | 42.0 | 2.95e-01 | 72.2% | 43.2% |
| 7mi4A01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.60 | 42.0 | 2.96e-01 | 77.8% | 21.0% |
| 4rayA02 | 3.30.1490.190 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain | 0.60 | 37.0 | 3.86e-01 | 72.2% | 66.0% |
| 7dvrA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 45.0 | 3.42e-01 | 83.3% | 58.9% |
| 1p4xA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 43.0 | 3.34e-01 | 77.8% | 59.3% |
| 2w5qA01 | 3.30.1120.170 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.59 | 42.0 | 3.58e-01 | 83.3% | 44.1% |
| 2ethA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 44.0 | 3.39e-01 | 85.2% | 55.3% |
| 8agaA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 42.0 | 3.31e-01 | 81.5% | 64.3% |
| 4s1hA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.57 | 40.0 | 2.50e-01 | 74.1% | 54.0% |
| 5cygB00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.56 | 42.0 | 2.66e-01 | 81.5% | 33.6% |
| 3u3pA01 | 2.10.50.10 | Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 | 0.56 | 41.0 | 3.62e-01 | 81.5% | 78.3% |
| 4c1sA00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.55 | 43.0 | 2.61e-01 | 85.2% | 56.3% |
| 4g9yA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 41.0 | 3.16e-01 | 85.2% | 58.1% |
| 2kqrA01 | 3.30.1910.20 | Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain | 0.54 | 33.0 | 3.03e-01 | 77.8% | 44.6% |
| 1pc6A00 | 1.10.3790.10 | Mainly Alpha › Orthogonal Bundle › NinB fold › NinB | 0.52 | 40.0 | 2.91e-01 | 81.5% | 42.6% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.52 | 35.0 | 3.06e-01 | 74.1% | 40.4% |
| 3obaA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 37.0 | 2.31e-01 | 77.8% | 16.3% |
| 4uy8X00 | 2.30.170.40 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 | 0.50 | 34.0 | 3.11e-01 | 72.2% | 67.5% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3593736 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.83 | 62.0 | 4.91e-01 | 98.1% | 42.0% |
| 3429256 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.82 | 58.0 | 3.46e-01 | 96.3% | 10.8% |
| 3788781 | 246.2.1.7 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B | 0.81 | 52.0 | 3.03e-01 | 87.0% | 8.9% |
| 3899209 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.80 | 54.0 | 3.58e-01 | 100.0% | 19.0% |
| 3576510 | 5051.1.1.1 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF | 0.79 | 58.0 | 3.33e-01 | 98.1% | 9.1% |
| 3240369 | 5001.1.1.66 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg | 0.78 | 65.0 | 4.04e-01 | 90.7% | 18.2% |
| 3929962 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.78 | 60.0 | 3.76e-01 | 81.5% | 18.0% |
| 3627712 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.77 | 62.0 | 3.49e-01 | 88.9% | 21.2% |
| 5023652 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.75 | 63.0 | 4.25e-01 | 96.3% | 26.5% |
| 3498497 | 301.7.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like | 0.73 | 45.0 | 2.93e-01 | 85.2% | 15.1% |
| 3630540 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.73 | 56.0 | 3.53e-01 | 81.5% | 17.4% |
| 3746945 | 5051.1.1.1 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF | 0.73 | 64.0 | 3.60e-01 | 98.1% | 46.5% |
| 3901808 | 5051.1.1.1 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF | 0.72 | 67.0 | 3.73e-01 | 100.0% | 49.6% |
| 4987043 | 2002.1.1.73 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT | 0.72 | 53.0 | 3.28e-01 | 85.2% | 13.0% |
| 3933631 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.72 | 62.0 | 3.78e-01 | 92.6% | 35.5% |
| 4239635 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.69 | 62.0 | 4.33e-01 | 98.1% | 51.5% |
| 5011468 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.69 | 62.0 | 4.71e-01 | 100.0% | 66.4% |
| 3991544 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.69 | 59.0 | 4.78e-01 | 98.1% | 51.0% |
| 3408042 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.69 | 63.0 | 3.71e-01 | 98.1% | 46.7% |
| 4456198 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 61.0 | 4.13e-01 | 98.1% | 57.3% |
| 3180843 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.68 | 49.0 | 3.30e-01 | 75.9% | 45.7% |
| 4946324 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.68 | 58.0 | 3.73e-01 | 90.7% | 75.9% |
| 3756087 | 5051.1.1.1 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF | 0.68 | 59.0 | 3.38e-01 | 98.1% | 23.2% |
| 3921728 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.68 | 60.0 | 4.60e-01 | 96.3% | 47.0% |
| 5018603 | 2006.1.6.15 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 | 0.67 | 53.0 | 3.38e-01 | 83.3% | 22.4% |
| 4987009 | 3837.1.1.1 ↗ | alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 | 0.65 | 58.0 | 4.07e-01 | 98.1% | 34.0% |
| 5042462 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.65 | 59.0 | 4.14e-01 | 100.0% | 49.7% |
| 3920672 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.65 | 53.0 | 4.39e-01 | 87.0% | 56.7% |
| 3649913 | 5050.1.1.58 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › NFD4_C | 0.64 | 53.0 | 3.68e-01 | 90.7% | 72.9% |
| 3954346 | 2006.1.6.15 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 | 0.64 | 51.0 | 3.13e-01 | 85.2% | 16.6% |
| 3931251 | 2484.1.1.145 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 | 0.63 | 48.0 | 3.06e-01 | 87.0% | 20.6% |
| 4303957 | 2006.1.6.15 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 | 0.63 | 50.0 | 3.54e-01 | 85.2% | 31.6% |
| 3797108 | 2008.1.1.29 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 | 0.62 | 43.0 | 2.93e-01 | 79.6% | 18.2% |
| 4438513 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.61 | 48.0 | 3.85e-01 | 87.0% | 68.2% |
| 3274487 | 605.1.1.155 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Gpi1 | 0.61 | 56.0 | 3.84e-01 | 100.0% | 36.0% |
| 3604748 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 44.0 | 2.93e-01 | 81.5% | 37.2% |
| 3656521 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 44.0 | 3.54e-01 | 83.3% | 61.1% |
| 4977355 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.55 | 38.0 | 2.52e-01 | 70.4% | 65.8% |
| 3371576 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 42.0 | 2.64e-01 | 98.1% | 36.2% |
| 3927286 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.54 | 38.0 | 3.43e-01 | 75.9% | 100.0% |
| 3307706 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.53 | 40.0 | 3.08e-01 | 85.2% | 32.9% |
| 3703262 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.52 | 35.0 | 2.97e-01 | 83.3% | 37.1% |
| 5018200 | 2004.1.1.220 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 | 0.50 | 42.0 | 2.50e-01 | 100.0% | 34.6% |
| 3232477 | 101.1.15.0 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain | 0.50 | 35.0 | 3.01e-01 | 77.8% | 69.0% |