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SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00254
Bact-VirSR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00254
Identity
- Kingdom:
- phage
Quality
88.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-117
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ae8D00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.66 | 46.0 | 4.10e-01 | 72.4% | 89.7% |
| 3b5qA00 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.61 | 49.0 | 3.28e-01 | 86.2% | 82.1% |
| 3ed4A02 | 3.30.1120.10 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.60 | 36.0 | 4.12e-01 | 76.7% | 81.9% |
| 4h5iB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 52.0 | 3.78e-01 | 99.1% | 95.1% |
| 3d4eA01 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.58 | 37.0 | 4.30e-01 | 90.5% | 88.1% |
| 6grrB01 | 3.30.457.10 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain | 0.58 | 38.0 | 4.44e-01 | 97.4% | 96.2% |
| 3p24A01 | 2.40.128.470 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 53.0 | 4.84e-01 | 100.0% | 90.2% |
| 2v43A01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.58 | 44.0 | 3.78e-01 | 80.2% | 91.8% |
| 2byoA00 | 2.50.20.20 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.58 | 40.0 | 3.43e-01 | 71.6% | 89.6% |
| 4h0aA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.57 | 43.0 | 3.20e-01 | 78.4% | 82.2% |
| 5c0pA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.57 | 51.0 | 3.87e-01 | 100.0% | 95.4% |
| 7ne4A01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.57 | 49.0 | 3.61e-01 | 95.7% | 52.3% |
| 1xfdA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.57 | 48.0 | 3.28e-01 | 94.8% | 49.4% |
| 8hmcA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 49.0 | 3.62e-01 | 95.7% | 76.6% |
| 1npeA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.57 | 50.0 | 3.87e-01 | 98.3% | 89.0% |
| 3ovcA01 | 3.30.200.150 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.56 | 32.0 | 3.93e-01 | 71.6% | 91.5% |
| 5yy8A00 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.55 | 48.0 | 3.79e-01 | 100.0% | 94.9% |
| 2xe4A02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.55 | 48.0 | 3.41e-01 | 94.8% | 51.1% |
| 2yzyA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.55 | 44.0 | 3.88e-01 | 83.6% | 90.8% |
| 3ottB02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 47.0 | 3.52e-01 | 96.6% | 94.3% |
| 3nvnA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 47.0 | 3.34e-01 | 95.7% | 86.4% |
| 1k32A01 | 2.120.10.60 | Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain | 0.55 | 47.0 | 3.67e-01 | 97.4% | 94.5% |
| 2ffsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 43.0 | 4.06e-01 | 86.2% | 75.2% |
| 7r5yA01 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.54 | 39.0 | 2.65e-01 | 75.0% | 92.8% |
| 2p4bB02 | 3.30.200.100 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain | 0.53 | 38.0 | 4.07e-01 | 93.1% | 86.7% |
| 2b5uA03 | 3.10.380.10 | Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Colicin E3-like ribonuclease domain | 0.53 | 36.0 | 3.92e-01 | 70.7% | 83.7% |
| 1llnA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.53 | 43.0 | 3.82e-01 | 89.7% | 85.1% |
| 2x1cB01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.53 | 47.0 | 3.58e-01 | 100.0% | 48.9% |
| 2z0zA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 42.0 | 3.63e-01 | 90.5% | 96.4% |
| 3v9fA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 45.0 | 3.42e-01 | 100.0% | 79.6% |
| 3ottA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 44.0 | 3.38e-01 | 100.0% | 78.6% |
| 1h7zA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.51 | 36.0 | 3.09e-01 | 74.1% | 96.9% |
| 4jpqA00 | 2.60.40.1190 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 43.0 | 3.57e-01 | 95.7% | 68.9% |
| 3s95A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 31.0 | 3.48e-01 | 85.3% | 80.7% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3225830 | 844.1.1.4 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase | 0.65 | 48.0 | 4.00e-01 | 84.5% | 44.5% |
| 4463771 | 3347.1.1.0 ↗ | beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 | 0.64 | 45.0 | 4.77e-01 | 73.3% | 82.9% |
| 4419937 | 77.1.1.0 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein | 0.63 | 43.0 | 4.81e-01 | 76.7% | 94.1% |
| 3210934 | 77.3.1.7 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF31062 | 0.61 | 41.0 | 4.34e-01 | 87.9% | 76.2% |
| 4961399 | 7515.1.1.2 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase | 0.61 | 49.0 | 3.30e-01 | 86.2% | 85.8% |
| 2712777 | 7515.1.1.5 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,SGSH_C | 0.60 | 49.0 | 3.24e-01 | 86.2% | 87.1% |
| 4628027 | 7515.1.1.5 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,SGSH_C | 0.60 | 48.0 | 3.18e-01 | 86.2% | 85.5% |
| 3591269 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.59 | 51.0 | 3.74e-01 | 94.8% | 55.3% |
| 3450393 | 5.1.4.586 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Str_synth | 0.59 | 50.0 | 3.96e-01 | 94.0% | 79.2% |
| 4980247 | 7515.1.1.2 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase | 0.59 | 47.0 | 3.22e-01 | 86.2% | 85.3% |
| 3178555 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 50.0 | 3.14e-01 | 96.6% | 32.4% |
| 4875201 | 3338.1.1.1 ↗ | a+b two layers › Fragilysin-3 prodomain-like › Fragilysin-3 prodomain › Fragilysin-3 prodomain › fragilysinNterm | 0.58 | 53.0 | 5.04e-01 | 100.0% | 91.3% |
| 2361 | 71.1.1.6 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LppX_LprAFG | 0.58 | 40.0 | 3.43e-01 | 71.6% | 89.6% |
| None | — | 0.57 | 51.0 | 3.92e-01 | 99.1% | 80.7% | |
| 3795581 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 50.0 | 3.22e-01 | 99.1% | 52.1% |
| 3799340 | 5.1.3.114 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MIOS_WD40 | 0.57 | 49.0 | 3.58e-01 | 99.1% | 62.3% |
| 3780929 | 5.1.3.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b | 0.57 | 49.0 | 3.80e-01 | 95.7% | 86.8% |
| 3672926 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.56 | 48.0 | 3.93e-01 | 95.7% | 70.7% |
| 3725348 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.56 | 43.0 | 3.45e-01 | 82.8% | 64.7% |
| 3716791 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.56 | 48.0 | 3.59e-01 | 96.6% | 81.3% |
| 4451770 | 4237.1.1.1 ↗ | beta barrels › FomD-like › FomD-like › FomD-like › DUF402 | 0.56 | 46.0 | 4.14e-01 | 90.5% | 76.4% |
| 3514520 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.55 | 43.0 | 3.57e-01 | 85.3% | 66.5% |
| 4018397 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 47.0 | 3.39e-01 | 100.0% | 76.1% |
| 5018904 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.54 | 42.0 | 3.58e-01 | 83.6% | 90.8% |
| 3482445 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 48.0 | 3.34e-01 | 100.0% | 89.8% |
| 4946053 | 4237.1.1.0 ↗ | beta barrels › FomD-like › FomD-like › FomD-like | 0.54 | 45.0 | 4.08e-01 | 89.7% | 78.1% |
| 3707133 | 12.3.1.19 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 | 0.52 | 41.0 | 3.41e-01 | 83.6% | 65.7% |
| 4001272 | 3561.1.1.0 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 | 0.51 | 42.0 | 2.81e-01 | 90.5% | 36.6% |
| 4324615 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.50 | 42.0 | 3.88e-01 | 93.1% | 87.1% |
| 3827726 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.50 | 42.0 | 3.16e-01 | 91.4% | 51.0% |