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SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00281
Bact-VirSR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00281
Identity
- Kingdom:
- phage
Quality
82.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-105
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1p32B00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.71 | 49.0 | 4.04e-01 | 100.0% | 40.9% |
| 6mlyB01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.68 | 52.0 | 3.83e-01 | 82.7% | 83.6% |
| 3a9gA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.66 | 50.0 | 3.50e-01 | 82.7% | 83.7% |
| 4nspA00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.62 | 44.0 | 3.34e-01 | 74.5% | 46.2% |
| 2zylA02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.61 | 48.0 | 3.69e-01 | 84.7% | 80.2% |
| 2xqyA01 | 3.30.500.50 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.60 | 48.0 | 3.97e-01 | 85.7% | 79.2% |
| 2vckA00 | 3.40.1500.20 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › | 0.60 | 51.0 | 3.95e-01 | 90.8% | 81.2% |
| 2fwvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 50.0 | 4.03e-01 | 92.9% | 92.1% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.59 | 43.0 | 3.62e-01 | 78.6% | 54.8% |
| 4k3yC00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.57 | 51.0 | 3.46e-01 | 99.0% | 49.0% |
| 4ckmB00 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.57 | 47.0 | 4.15e-01 | 90.8% | 96.5% |
| 2vsmA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.57 | 49.0 | 3.30e-01 | 99.0% | 47.9% |
| 5jmfA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.56 | 51.0 | 3.70e-01 | 100.0% | 83.4% |
| 1h91A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 38.0 | 3.16e-01 | 70.4% | 85.0% |
| 1xuvA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 38.0 | 3.26e-01 | 99.0% | 42.9% |
| 7bwcA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 43.0 | 3.07e-01 | 86.7% | 66.9% |
| 1qhlA00 | 3.40.1140.10 | Alpha Beta › 3-Layer(aba) Sandwich › N-terminal domain of mukB › | 0.54 | 47.0 | 3.77e-01 | 98.0% | 68.0% |
| 3sy9C01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.54 | 49.0 | 3.32e-01 | 100.0% | 32.3% |
| 3al9A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 46.0 | 3.05e-01 | 100.0% | 63.0% |
| 2qmiA02 | 2.40.128.210 | Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain | 0.53 | 42.0 | 4.17e-01 | 88.8% | 83.0% |
| 7dd9A02 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.52 | 46.0 | 3.44e-01 | 99.0% | 83.3% |
| 4boeA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 40.0 | 3.50e-01 | 82.7% | 73.4% |
| 4h5bA00 | 3.30.1460.70 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.52 | 46.0 | 4.02e-01 | 100.0% | 72.4% |
| 1aqbA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 42.0 | 3.55e-01 | 100.0% | 52.0% |
| 2hzmB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.51 | 42.0 | 3.24e-01 | 90.8% | 87.2% |
| 4qn0B00 | 3.40.570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A | 0.51 | 46.0 | 3.43e-01 | 99.0% | 86.2% |
| 3w7tA01 | 2.70.98.50 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans | 0.50 | 43.0 | 3.34e-01 | 98.0% | 94.4% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3456597 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.70 | 48.0 | 3.96e-01 | 100.0% | 41.1% |
| 3819740 | 284.1.3.4 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK | 0.68 | 45.0 | 4.66e-01 | 91.8% | 72.2% |
| 3812869 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.68 | 51.0 | 5.13e-01 | 100.0% | 77.0% |
| 3802306 | 284.1.2.0 ↗ | a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases | 0.67 | 47.0 | 4.86e-01 | 94.9% | 75.8% |
| 3322026 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.66 | 52.0 | 4.46e-01 | 84.7% | 74.2% |
| 3619496 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.66 | 47.0 | 3.17e-01 | 74.5% | 50.0% |
| 3338423 | 3131.1.1.2 ↗ | a+b two layers › FYR domain › FYR domain › FYR domain › FYRN | 0.65 | 50.0 | 4.29e-01 | 79.6% | 86.0% |
| 3666605 | 3131.1.1.1 ↗ | a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC | 0.65 | 51.0 | 4.13e-01 | 81.6% | 90.5% |
| 3469979 | 12.3.1.43 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › NCU-G1 | 0.65 | 59.0 | 3.98e-01 | 100.0% | 97.7% |
| None | — | 0.65 | 51.0 | 3.00e-01 | 83.7% | 40.2% | |
| 5035253 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.64 | 59.0 | 4.19e-01 | 99.0% | 74.5% |
| 5007185 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.64 | 55.0 | 4.74e-01 | 93.9% | 62.1% |
| 4114942 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.63 | 50.0 | 4.16e-01 | 98.0% | 48.0% |
| 3500362 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.63 | 50.0 | 3.63e-01 | 85.7% | 50.7% |
| 3191209 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.62 | 45.0 | 4.01e-01 | 73.5% | 97.0% |
| 3318685 | 284.1.3.2 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C | 0.62 | 48.0 | 4.71e-01 | 94.9% | 76.2% |
| 4606628 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.62 | 46.0 | 3.71e-01 | 78.6% | 82.6% |
| 146266 | 295.1.1.8 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3276 | 0.61 | 41.0 | 4.41e-01 | 90.8% | 81.0% |
| 4879580 | 71.1.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA | 0.60 | 48.0 | 4.12e-01 | 84.7% | 75.8% |
| 3734383 | 5.1.11.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed | 0.59 | 50.0 | 3.39e-01 | 92.9% | 33.9% |
| 3784765 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 52.0 | 3.48e-01 | 100.0% | 52.6% |
| 3738810 | 4252.1.1.5 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › Svf1 | 0.59 | 50.0 | 4.12e-01 | 92.9% | 60.0% |
| 4375642 | 5084.5.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › MDM10 | 0.58 | 48.0 | 3.15e-01 | 87.8% | 88.4% |
| 3385986 | 5084.3.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta | 0.57 | 51.0 | 4.00e-01 | 95.9% | 92.4% |
| 3935776 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 44.0 | 3.05e-01 | 81.6% | 72.3% |
| 3788862 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.57 | 47.0 | 3.15e-01 | 90.8% | 25.3% |
| 3708379 | 5.1.5.208 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C, PQQ_2, Beta-prop_EMC1_N | 0.57 | 51.0 | 3.03e-01 | 99.0% | 30.7% |
| 3818341 | 331.9.1.4 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla | 0.57 | 39.0 | 4.33e-01 | 99.0% | 88.5% |
| 3633634 | 5.1.4.80 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Utp8_b_propeller | 0.57 | 50.0 | 3.30e-01 | 100.0% | 66.3% |
| 3940149 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.57 | 46.0 | 4.80e-01 | 98.0% | 94.4% |
| 5038819 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.56 | 42.0 | 3.09e-01 | 77.6% | 87.1% |
| 4283763 | 12.3.1.6 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N | 0.56 | 51.0 | 3.62e-01 | 100.0% | 100.0% |
| 4940923 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.55 | 42.0 | 4.55e-01 | 99.0% | 97.5% |
| 3929846 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.55 | 48.0 | 3.45e-01 | 99.0% | 41.2% |
| 3719349 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 48.0 | 3.16e-01 | 96.9% | 35.5% |
| 5019287 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.55 | 38.0 | 4.06e-01 | 99.0% | 82.4% |
| 3414586 | 11.1.1.824 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Chitin_bind_4 | 0.54 | 42.0 | 4.35e-01 | 81.6% | 93.5% |
| 5008670 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.54 | 48.0 | 3.58e-01 | 99.0% | 51.2% |
| 3783070 | 5.1.4.119 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rav1p_C | 0.54 | 46.0 | 3.18e-01 | 95.9% | 41.4% |
| 4276603 | 5084.10.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD | 0.54 | 49.0 | 3.05e-01 | 100.0% | 23.7% |
| 3448058 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.53 | 47.0 | 3.27e-01 | 100.0% | 47.8% |
| 3695701 | 5084.5.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 | 0.52 | 48.0 | 3.34e-01 | 100.0% | 32.5% |
| 3827592 | 5084.5.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 | 0.51 | 47.0 | 3.94e-01 | 100.0% | 63.3% |
| 3708351 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.50 | 45.0 | 3.16e-01 | 100.0% | 48.3% |
| 3960152 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.50 | 44.0 | 3.97e-01 | 98.0% | 83.0% |
| 3913017 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.50 | 42.0 | 3.88e-01 | 91.8% | 72.0% |