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SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00287
Bact-VirSR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00287
Identity
- Kingdom:
- phage
Quality
96.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 39-123
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4yzgA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.72 | 65.0 | 4.43e-01 | 98.8% | 68.7% |
| 1e94A00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.67 | 57.0 | 4.50e-01 | 100.0% | 45.4% |
| 6qm7M00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.61 | 54.0 | 4.08e-01 | 100.0% | 42.1% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.61 | 28.0 | 3.04e-01 | 100.0% | 50.0% |
| 1te5A00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.61 | 53.0 | 3.86e-01 | 100.0% | 60.5% |
| 1ryp100 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.60 | 53.0 | 3.93e-01 | 100.0% | 49.1% |
| 6qm7N00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.60 | 53.0 | 3.96e-01 | 100.0% | 50.0% |
| 8adnN01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.59 | 52.0 | 4.06e-01 | 100.0% | 55.0% |
| 6qm7J00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.59 | 49.0 | 3.77e-01 | 92.9% | 93.1% |
| 6e5bN00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.58 | 51.0 | 3.93e-01 | 100.0% | 43.7% |
| 2uytA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 46.0 | 3.40e-01 | 89.4% | 72.5% |
| 6muwJ00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.55 | 48.0 | 3.71e-01 | 100.0% | 54.6% |
| 1xffA00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.55 | 39.0 | 2.85e-01 | 80.0% | 26.5% |
| 4bt2A01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.54 | 36.0 | 3.27e-01 | 89.4% | 50.9% |
| 2ntkB00 | 3.60.20.20 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like | 0.53 | 45.0 | 3.52e-01 | 97.6% | 60.4% |
| 2vqrA01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.53 | 41.0 | 2.58e-01 | 82.4% | 65.2% |
| 1xv2C01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.53 | 35.0 | 3.22e-01 | 89.4% | 52.3% |
| 2j8gA03 | 2.20.120.10 | Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 | 0.52 | 27.0 | 3.14e-01 | 97.6% | 70.7% |
| 3ihpA03 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 43.0 | 2.95e-01 | 96.5% | 94.6% |
| 3r7aB00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.50 | 41.0 | 3.19e-01 | 97.6% | 89.9% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031431 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.77 | 32.0 | 3.70e-01 | 100.0% | 50.8% |
| 2140348 | 210.1.1.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits | 0.76 | 70.0 | 5.32e-01 | 100.0% | 46.5% |
| 3820293 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.71 | 63.0 | 4.36e-01 | 100.0% | 60.0% |
| 4534784 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.69 | 59.0 | 4.57e-01 | 100.0% | 43.9% |
| 4023905 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.68 | 57.0 | 4.36e-01 | 100.0% | 40.0% |
| 3593380 | 210.1.1.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits | 0.68 | 57.0 | 4.40e-01 | 100.0% | 41.6% |
| 4108185 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.67 | 57.0 | 4.46e-01 | 100.0% | 45.1% |
| 2980416 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.66 | 59.0 | 4.34e-01 | 100.0% | 39.1% |
| 3191231 | 210.1.1.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome,Pr_beta_C | 0.63 | 56.0 | 4.12e-01 | 100.0% | 37.6% |
| 3908924 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.62 | 56.0 | 4.00e-01 | 100.0% | 33.7% |
| 4877910 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.61 | 55.0 | 4.46e-01 | 100.0% | 55.6% |
| 4076760 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.59 | 52.0 | 3.68e-01 | 100.0% | 35.3% |
| 5031413 | 230.4.1.2 ↗ | a+b two layers › T-fold › ApbE-like › ApbE-like › AbpE_bact | 0.58 | 46.0 | 4.16e-01 | 90.6% | 61.7% |
| 4259223 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.57 | 50.0 | 3.69e-01 | 100.0% | 55.3% |
| 4422215 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.57 | 50.0 | 3.70e-01 | 100.0% | 56.5% |
| 4400946 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.55 | 41.0 | 3.53e-01 | 82.4% | 68.7% |
| 4321843 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.55 | 41.0 | 3.07e-01 | 81.2% | 30.7% |
| None | — | 0.55 | 38.0 | 2.81e-01 | 84.7% | 26.4% | |
| 3253551 | 219.1.1.6 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 | 0.54 | 43.0 | 3.11e-01 | 90.6% | 58.6% |
| 4978026 | 2007.1.11.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › L-fucose isomerase, N-terminal and second domains | 0.53 | 44.0 | 3.76e-01 | 92.9% | 82.8% |
| 3513468 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.53 | 45.0 | 3.37e-01 | 92.9% | 95.8% |
| 3221476 | 219.1.1.97 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase | 0.53 | 42.0 | 3.19e-01 | 88.2% | 57.3% |
| 4960783 | 219.1.1.63 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › TGL | 0.53 | 42.0 | 3.16e-01 | 89.4% | 93.3% |
| 5013417 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.52 | 46.0 | 3.35e-01 | 98.8% | 57.0% |
| 3037632 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.51 | 45.0 | 3.03e-01 | 100.0% | 47.6% |
| 3406792 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 33.0 | 3.62e-01 | 100.0% | 81.4% |
| 4498618 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.50 | 43.0 | 2.87e-01 | 98.8% | 36.0% |
| 3887034 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.50 | 43.0 | 2.70e-01 | 100.0% | 22.2% |