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SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00321

Bact-Vir

SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00321

Identity

Kingdom:
phage

Quality

89.9 mean pLDDT

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-17_31-94
PDB
Domain cluster: rep: MG752970.1__AVH85358.1__RsoM2USA_430__00430__D11-89
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00166.27 best Cpn10 47.6 2.00e-12 98.6% 69.9%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1p3hB00 2.30.33.40 Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin 0.88 82.0 7.32e-01 100.0% 88.8%
6mrc100 2.30.33.40 Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin 0.86 81.0 7.15e-01 100.0% 86.0%
1g31A00 2.30.33.40 Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin 0.77 71.0 6.16e-01 100.0% 89.7%
8adlB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 36.0 2.34e-01 100.0% 13.8%
1wqsA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 35.0 3.61e-01 94.5% 61.4%
2j4xA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 43.0 4.40e-01 84.9% 94.4%
4jxkA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.57 50.0 3.89e-01 100.0% 51.9%
2k5nA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 4.09e-01 100.0% 77.0%
3jscA00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 3.78e-01 82.2% 68.8%
1hh2P02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 40.0 4.25e-01 100.0% 92.1%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 34.0 3.42e-01 93.2% 66.2%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 33.0 3.38e-01 80.8% 69.1%
3anwA02 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.51 35.0 3.89e-01 83.6% 89.7%
5gj7A02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.51 43.0 4.04e-01 100.0% 75.5%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4147631 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.94 82.0 8.19e-01 100.0% 89.3%
4173931 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.91 86.0 7.73e-01 100.0% 90.5%
4378688 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.91 87.0 7.78e-01 100.0% 90.5%
4082853 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.91 86.0 7.75e-01 100.0% 90.4%
4341607 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.91 86.0 7.64e-01 100.0% 87.8%
3508217 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.88 83.0 7.10e-01 100.0% 89.1%
3938500 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.88 80.0 7.41e-01 97.3% 93.3%
3674955 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.87 75.0 7.24e-01 98.6% 82.5%
3252896 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.86 81.0 7.32e-01 100.0% 92.6%
4029028 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.86 80.0 7.08e-01 100.0% 87.0%
3175923 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.84 79.0 6.99e-01 100.0% 87.0%
4024554 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.84 78.0 6.98e-01 100.0% 90.8%
3594024 236.1.2.0 ↗ beta barrels › GroES-like › GroES-related › GroES 0.82 77.0 7.11e-01 100.0% 90.0%
3359945 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.80 75.0 6.72e-01 100.0% 82.5%
4417276 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.80 73.0 6.52e-01 100.0% 92.0%
2794380 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.79 71.0 6.56e-01 100.0% 88.2%
4182470 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.78 72.0 6.57e-01 100.0% 90.4%
2794379 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.73 65.0 6.00e-01 100.0% 85.3%
4993659 2.1.1.70 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.62 43.0 3.52e-01 95.9% 40.0%
3723120 2.1.1.70 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.61 42.0 3.43e-01 95.9% 38.5%
4011957 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 41.0 3.56e-01 95.9% 45.2%
3212056 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 45.0 4.40e-01 83.6% 88.7%
5024077 2.1.1.363 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF2101 0.57 45.0 4.17e-01 95.9% 66.3%
3702234 2.1.1.3 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSD 0.56 43.0 4.18e-01 98.6% 75.0%
5040535 2.1.1.3 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSD 0.55 39.0 4.08e-01 98.6% 86.2%
3427031 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 41.0 3.55e-01 84.9% 60.8%
3655401 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 41.0 3.87e-01 87.7% 93.3%
5059561 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 41.0 3.71e-01 93.2% 87.6%