←Back to structures
SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00362
Bact-VirSR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00362
Identity
- Kingdom:
- phage
Quality
82.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 37-118
Domain cluster:
representative
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ozjA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.91 | 53.0 | 4.77e-01 | 100.0% | 45.0% |
| 3lwcA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.89 | 51.0 | 4.72e-01 | 100.0% | 46.6% |
| 1cauA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.88 | 56.0 | 4.16e-01 | 100.0% | 29.3% |
| 3eqeA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.88 | 61.0 | 4.79e-01 | 100.0% | 37.8% |
| 5cadA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.87 | 55.0 | 4.05e-01 | 100.0% | 27.5% |
| 3fjsC00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.87 | 51.0 | 4.65e-01 | 100.0% | 45.8% |
| 7zvmA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.86 | 52.0 | 4.75e-01 | 100.0% | 49.0% |
| 3d82A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.86 | 52.0 | 4.74e-01 | 100.0% | 49.0% |
| 3cewA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.85 | 51.0 | 4.59e-01 | 100.0% | 45.5% |
| 3rnsA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.85 | 50.0 | 4.52e-01 | 100.0% | 45.4% |
| 5cu1A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.84 | 51.0 | 3.74e-01 | 100.0% | 25.4% |
| 4lejA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.84 | 53.0 | 4.03e-01 | 100.0% | 29.8% |
| 1y3tA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.84 | 50.0 | 3.95e-01 | 100.0% | 31.2% |
| 2oa2A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.83 | 55.0 | 4.79e-01 | 100.0% | 46.3% |
| 6l4cA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.83 | 53.0 | 3.94e-01 | 100.0% | 28.8% |
| 3eo6A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.82 | 50.0 | 4.60e-01 | 100.0% | 48.1% |
| 5fq0A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.82 | 49.0 | 4.42e-01 | 100.0% | 45.5% |
| 5wxuA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.80 | 53.0 | 4.16e-01 | 100.0% | 34.6% |
| 6l9iA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.80 | 52.0 | 3.91e-01 | 100.0% | 30.0% |
| 1v70A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.80 | 48.0 | 4.42e-01 | 100.0% | 47.6% |
| 3d0jA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.80 | 60.0 | 4.91e-01 | 100.0% | 46.4% |
| 1zvfB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.80 | 54.0 | 4.19e-01 | 100.0% | 34.8% |
| 1fxzA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.79 | 53.0 | 4.10e-01 | 100.0% | 34.1% |
| 1uijB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.77 | 52.0 | 4.07e-01 | 100.0% | 34.5% |
| 5fljA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.77 | 51.0 | 3.83e-01 | 100.0% | 30.2% |
| 2gu9A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.76 | 47.0 | 4.37e-01 | 100.0% | 50.5% |
| 4yrdA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.74 | 51.0 | 4.46e-01 | 100.0% | 48.7% |
| 4lejA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.74 | 52.0 | 4.04e-01 | 100.0% | 35.5% |
| 5cadA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.73 | 53.0 | 3.98e-01 | 100.0% | 33.3% |
| 1s4cC00 | 2.60.120.370 | Mainly Beta › Sandwich › Jelly Rolls › YhcH/YjgK/YiaL | 0.70 | 59.0 | 4.82e-01 | 96.3% | 50.3% |
| 1tq5A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.70 | 40.0 | 3.65e-01 | 100.0% | 42.6% |
| 4ca9A00 | 2.60.120.340 | Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain | 0.66 | 48.0 | 4.49e-01 | 100.0% | 63.3% |
| 4ccjA01 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.65 | 60.0 | 4.17e-01 | 100.0% | 58.1% |
| 4nplA00 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.61 | 50.0 | 3.61e-01 | 100.0% | 33.3% |
| 3kmhA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 55.0 | 3.97e-01 | 100.0% | 50.5% |
| 2bnmA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 55.0 | 4.78e-01 | 100.0% | 68.3% |
| 4oi4C01 | 2.60.120.1030 | Mainly Beta › Sandwich › Jelly Rolls › Clp1, DNA binding domain | 0.58 | 45.0 | 4.47e-01 | 100.0% | 79.8% |
| 2y0oA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 53.0 | 4.10e-01 | 100.0% | 59.6% |
| 5u55A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 54.0 | 4.61e-01 | 100.0% | 68.9% |
| 2f4pA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 52.0 | 4.34e-01 | 100.0% | 59.7% |
| 4ohvA01 | 2.60.120.1030 | Mainly Beta › Sandwich › Jelly Rolls › Clp1, DNA binding domain | 0.57 | 43.0 | 4.34e-01 | 100.0% | 82.5% |
| 1j3qB00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 50.0 | 3.78e-01 | 100.0% | 48.6% |
| 3m5gA02 | 3.90.209.20 | Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain | 0.53 | 47.0 | 3.55e-01 | 100.0% | 82.7% |
| 2qqkA02 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.52 | 38.0 | 3.48e-01 | 100.0% | 56.5% |
| 3m1hD00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 46.0 | 3.63e-01 | 100.0% | 55.7% |
| 1y9qA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 45.0 | 4.31e-01 | 100.0% | 86.0% |
| 3cu7A10 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 39.0 | 3.59e-01 | 100.0% | 62.6% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4011611 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.80 | 74.0 | 4.95e-01 | 100.0% | 34.0% |
| 3282563 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.80 | 74.0 | 5.37e-01 | 100.0% | 42.4% |
| 4025507 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.75 | 46.0 | 4.85e-01 | 100.0% | 68.0% |
| 3971673 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.73 | 61.0 | 4.11e-01 | 100.0% | 26.7% |
| 3987543 | 10.12.1.18 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DUF386 | 0.72 | 61.0 | 5.01e-01 | 100.0% | 51.3% |
| 3989847 | 10.12.1.18 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DUF386 | 0.71 | 61.0 | 4.96e-01 | 100.0% | 51.3% |
| 3165210 | 10.12.1.40 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 | 0.70 | 58.0 | 3.91e-01 | 100.0% | 25.2% |
| 3688937 | 10.12.1.29 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CDO_I | 0.69 | 60.0 | 4.31e-01 | 100.0% | 35.7% |
| 3165658 | 10.12.1.18 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DUF386 | 0.69 | 61.0 | 4.93e-01 | 100.0% | 51.6% |
| 2123008 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.68 | 59.0 | 4.63e-01 | 100.0% | 46.1% |
| 3976278 | 10.12.1.18 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DUF386 | 0.67 | 59.0 | 4.77e-01 | 100.0% | 51.0% |
| 4929162 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.67 | 62.0 | 5.24e-01 | 100.0% | 71.5% |
| 3293824 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.64 | 53.0 | 3.78e-01 | 100.0% | 33.0% |
| 3497743 | 10.12.1.5 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C | 0.64 | 59.0 | 4.73e-01 | 100.0% | 82.6% |
| 4165761 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.62 | 53.0 | 3.89e-01 | 100.0% | 37.9% |
| 3292173 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.61 | 53.0 | 3.51e-01 | 100.0% | 25.8% |
| 3492248 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.58 | 41.0 | 4.00e-01 | 100.0% | 66.3% |
| 4454790 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.58 | 53.0 | 3.75e-01 | 100.0% | 36.4% |
| 3447537 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.57 | 53.0 | 3.86e-01 | 100.0% | 40.5% |
| 4928383 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.55 | 37.0 | 3.68e-01 | 100.0% | 64.4% |
| 3242913 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.55 | 41.0 | 3.69e-01 | 100.0% | 57.4% |
| 4538436 | 10.2.1.55 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL | 0.55 | 50.0 | 4.25e-01 | 100.0% | 75.4% |
| 4940276 | 10.2.1.75 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CBM96 | 0.54 | 48.0 | 3.80e-01 | 100.0% | 60.6% |
| 4392147 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.54 | 49.0 | 3.32e-01 | 100.0% | 37.5% |
| 3949882 | 10.39.1.1 ↗ | beta sandwiches › jelly-roll › Soluble domain of MmpS4 › Soluble domain of MmpS4 › Mycobact_memb | 0.53 | 33.0 | 3.29e-01 | 93.9% | 58.4% |
| 3244708 | 10.4.1.27 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › PF29839 | 0.53 | 37.0 | 3.34e-01 | 100.0% | 50.8% |
| 5013355 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.53 | 38.0 | 3.82e-01 | 100.0% | 75.3% |
| 3503404 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 43.0 | 3.95e-01 | 100.0% | 68.5% |
| 3946137 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.52 | 38.0 | 3.88e-01 | 100.0% | 80.0% |
| 3519566 | 10.32.1.230 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › NDNF_N | 0.52 | 45.0 | 3.89e-01 | 100.0% | 69.6% |
| 5014449 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.52 | 35.0 | 3.54e-01 | 100.0% | 69.4% |
| 4979173 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.52 | 41.0 | 3.78e-01 | 100.0% | 66.7% |
| 3498815 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 45.0 | 3.59e-01 | 100.0% | 75.3% |