←Back to structures
SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00375
Bact-VirSR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00375
Identity
- Kingdom:
- phage
Quality
85.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-69
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5fl3A01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.71 | 35.0 | 3.07e-01 | 82.4% | 32.0% |
| 4m7xA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.67 | 39.0 | 3.51e-01 | 100.0% | 41.8% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.67 | 42.0 | 3.34e-01 | 98.5% | 31.6% |
| 1v9xA00 | 3.30.1740.10 | Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type | 0.67 | 61.0 | 5.09e-01 | 100.0% | 81.6% |
| 4mb4A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 33.0 | 3.16e-01 | 82.4% | 43.0% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.64 | 44.0 | 3.83e-01 | 100.0% | 46.2% |
| 3p0cA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.63 | 42.0 | 3.65e-01 | 100.0% | 42.3% |
| 4e1pA00 | 3.30.60.230 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain | 0.62 | 40.0 | 4.42e-01 | 88.2% | 81.8% |
| 1xteA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.62 | 43.0 | 3.64e-01 | 100.0% | 42.2% |
| 4bf3A00 | 2.30.31.50 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F | 0.62 | 36.0 | 2.97e-01 | 91.2% | 29.3% |
| 2ar5A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.60 | 42.0 | 3.54e-01 | 100.0% | 42.7% |
| 1vq8X00 | 3.10.440.10 | Alpha Beta › Roll › Ribosomal Protein L31e; Chain: W; › Ribosomal protein L31 | 0.60 | 44.0 | 4.18e-01 | 79.4% | 100.0% |
| 3u12A00 | 2.30.29.180 | Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain | 0.60 | 39.0 | 3.43e-01 | 89.7% | 43.3% |
| 1ixrA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 43.0 | 4.42e-01 | 80.9% | 100.0% |
| 4fchA01 | 2.60.40.3620 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 43.0 | 3.70e-01 | 82.4% | 70.6% |
| 3a57A00 | 2.60.270.30 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Vibrio parahaemolyticus thermostable direct hemolysin | 0.56 | 41.0 | 3.25e-01 | 79.4% | 94.2% |
| 1bvsA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 43.0 | 4.44e-01 | 86.8% | 100.0% |
| 4pkcC00 | 6.20.90.20 | Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit | 0.56 | 34.0 | 4.03e-01 | 86.8% | 100.0% |
| 1cukA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 42.0 | 4.32e-01 | 86.8% | 100.0% |
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.53 | 37.0 | 3.58e-01 | 100.0% | 63.6% |
| 2k5nA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 40.0 | 3.92e-01 | 82.4% | 89.2% |
| 4cllA01 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.52 | 41.0 | 2.89e-01 | 85.3% | 61.9% |
| 2c9oB02 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.52 | 38.0 | 3.23e-01 | 100.0% | 46.9% |
| 2i9wA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 41.0 | 3.18e-01 | 95.6% | 64.8% |
| 5is8A02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.50 | 40.0 | 2.93e-01 | 89.7% | 48.7% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3741537 | 377.1.2.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP | 0.76 | 60.0 | 5.07e-01 | 97.1% | 51.8% |
| 3591633 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.76 | 47.0 | 4.01e-01 | 100.0% | 39.1% |
| 3714703 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.75 | 47.0 | 4.12e-01 | 100.0% | 43.0% |
| 3250863 | 377.1.2.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP | 0.75 | 57.0 | 5.30e-01 | 97.1% | 64.7% |
| 5045085 | 377.1.2.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP | 0.73 | 54.0 | 5.13e-01 | 92.6% | 66.3% |
| 3985617 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.72 | 46.0 | 4.63e-01 | 98.5% | 62.9% |
| 3307915 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.72 | 46.0 | 4.76e-01 | 80.9% | 69.2% |
| 3237892 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.71 | 52.0 | 5.47e-01 | 88.2% | 86.7% |
| 5000498 | 896.1.1.1 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e | 0.69 | 40.0 | 4.28e-01 | 100.0% | 65.0% |
| 3386302 | 3186.1.1.1 ↗ | a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK › Flg_hook | 0.68 | 35.0 | 3.29e-01 | 82.4% | 40.0% |
| 3509606 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.67 | 43.0 | 3.10e-01 | 100.0% | 22.6% |
| 3864474 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.66 | 43.0 | 3.25e-01 | 100.0% | 27.3% |
| 3217638 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.65 | 40.0 | 3.86e-01 | 100.0% | 56.0% |
| 3718300 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.64 | 42.0 | 4.08e-01 | 100.0% | 60.0% |
| 4963795 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 51.0 | 5.01e-01 | 100.0% | 81.3% |
| 3217379 | 896.1.1.2 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 | 0.64 | 49.0 | 4.38e-01 | 100.0% | 58.9% |
| 4120496 | 377.1.1.8 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S26e | 0.63 | 47.0 | 4.60e-01 | 86.8% | 72.0% |
| 4944060 | 259.1.1.0 ↗ | a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain | 0.63 | 48.0 | 4.47e-01 | 82.4% | 100.0% |
| 402817 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.63 | 42.0 | 3.69e-01 | 100.0% | 44.3% |
| 3604446 | 2004.1.1.480 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 | 0.62 | 38.0 | 2.22e-01 | 97.1% | 6.7% |
| 3173378 | 109.4.1.338 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIC1 | 0.61 | 34.0 | 2.32e-01 | 82.4% | 14.3% |
| 2035461 | 3380.1.1.1 ↗ | a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Lsr2 | 0.61 | 40.0 | 4.40e-01 | 89.7% | 82.1% |
| 5068234 | 259.1.1.0 ↗ | a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain | 0.60 | 45.0 | 4.14e-01 | 80.9% | 97.8% |
| 3648115 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.60 | 46.0 | 3.71e-01 | 100.0% | 42.2% |
| 4000394 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 46.0 | 4.57e-01 | 83.8% | 91.4% |
| 3501631 | 896.1.1.2 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 | 0.59 | 51.0 | 4.39e-01 | 100.0% | 63.0% |
| 4038328 | 2.1.1.14 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N | 0.58 | 46.0 | 4.69e-01 | 86.8% | 100.0% |
| 3464453 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.58 | 36.0 | 3.31e-01 | 86.8% | 47.7% |
| 3230020 | 2.1.1.235 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF26704 | 0.58 | 44.0 | 4.36e-01 | 80.9% | 95.7% |
| 3863681 | 2.1.1.237 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30958 | 0.58 | 43.0 | 4.44e-01 | 80.9% | 92.3% |
| 4180206 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.56 | 43.0 | 3.74e-01 | 82.4% | 99.0% |
| 4023312 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.56 | 46.0 | 3.80e-01 | 100.0% | 50.4% |
| 3741431 | 2.1.1.42 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C | 0.56 | 41.0 | 3.31e-01 | 82.4% | 70.0% |
| 4956065 | 2.26.1.1 ↗ | beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 | 0.55 | 43.0 | 3.78e-01 | 83.8% | 99.0% |
| 5074506 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.55 | 41.0 | 3.72e-01 | 80.9% | 81.9% |
| 3889658 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 40.0 | 4.01e-01 | 82.4% | 90.0% |
| 3266842 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.53 | 46.0 | 3.81e-01 | 100.0% | 81.6% |
| 3855429 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 40.0 | 2.34e-01 | 100.0% | 9.5% |
| 168736 | 2.1.1.3 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSD | 0.52 | 40.0 | 4.07e-01 | 82.4% | 100.0% |
| 3605369 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 33.0 | 3.56e-01 | 97.1% | 78.2% |
| 4676584 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.52 | 37.0 | 3.84e-01 | 97.1% | 83.1% |
| 3597429 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 41.0 | 4.05e-01 | 89.7% | 98.7% |
| 3927894 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.51 | 45.0 | 3.63e-01 | 100.0% | 71.9% |
| 4998126 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.51 | 39.0 | 3.72e-01 | 86.8% | 90.6% |
| 3474246 | 2.1.1.3 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSD | 0.51 | 40.0 | 3.99e-01 | 86.8% | 98.6% |
| 3893274 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.51 | 41.0 | 3.22e-01 | 100.0% | 41.3% |
| 3619859 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.50 | 44.0 | 3.69e-01 | 100.0% | 69.2% |