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SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00381
Bact-VirSR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00381
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-78
Domain cluster:
rep: SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00435__D2-69
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pgvA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.56 | 43.0 | 3.94e-01 | 83.1% | 79.2% |
| 3k67A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 36.0 | 2.96e-01 | 71.4% | 51.3% |
| 5iqlA00 | 2.60.40.1970 | Mainly Beta › Sandwich › Immunoglobulin-like › YEATS domain | 0.52 | 43.0 | 3.67e-01 | 92.2% | 55.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5058618 | 10.12.1.4 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom | 0.59 | 39.0 | 3.09e-01 | 96.1% | 33.3% |
| 5016129 | 101.1.9.75 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF61 | 0.56 | 40.0 | 4.21e-01 | 100.0% | 85.5% |
| 5032006 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.54 | 41.0 | 3.71e-01 | 100.0% | 59.0% |
| 4930630 | 101.1.9.75 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF61 | 0.54 | 37.0 | 3.99e-01 | 100.0% | 87.7% |
| 3959055 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.52 | 40.0 | 4.33e-01 | 81.8% | 100.0% |
| 5065972 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.52 | 34.0 | 3.48e-01 | 98.7% | 69.3% |
| 4030621 | 837.1.1.1 ↗ | a+b two layers › Ribosomal protein S16 › Ribosomal protein S16 › Ribosomal protein S16 › Ribosomal_S16 | 0.51 | 36.0 | 3.20e-01 | 72.7% | 66.1% |