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SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00435
Bact-VirSR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00435
Identity
- Kingdom:
- phage
Quality
89.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-64
Domain cluster:
rep: NC_023498.1__YP_009002747.1__CC50_gp014__00096__D26-89
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2eqkA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.80 | 66.0 | 6.22e-01 | 100.0% | 74.0% |
| 6c6sD02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 64.0 | 6.56e-01 | 98.4% | 93.3% |
| 3pieB05 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 68.0 | 6.77e-01 | 100.0% | 96.9% |
| 1tg0A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.74 | 66.0 | 6.48e-01 | 96.8% | 97.0% |
| 5zwzA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 68.0 | 6.47e-01 | 98.4% | 90.0% |
| 3oymA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 66.0 | 6.35e-01 | 100.0% | 91.4% |
| 4cshA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.72 | 64.0 | 4.67e-01 | 100.0% | 37.8% |
| 2egcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.71 | 61.0 | 5.72e-01 | 91.9% | 78.7% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.71 | 61.0 | 6.04e-01 | 91.9% | 95.3% |
| 2dk3A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.71 | 65.0 | 5.77e-01 | 100.0% | 74.4% |
| 2eqmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 55.0 | 5.86e-01 | 90.3% | 98.1% |
| 1wfwA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.71 | 60.0 | 5.62e-01 | 91.9% | 83.8% |
| 1v1cA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.69 | 58.0 | 5.68e-01 | 91.9% | 94.1% |
| 2ke9A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.65 | 55.0 | 5.40e-01 | 91.9% | 94.0% |
| 2gs5A01 | 3.40.1740.10 | Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like | 0.65 | 56.0 | 4.02e-01 | 98.4% | 77.1% |
| 1t0hA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 50.0 | 4.35e-01 | 87.1% | 67.7% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 53.0 | 4.90e-01 | 100.0% | 75.9% |
| 1u3oA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 48.0 | 4.84e-01 | 88.7% | 96.8% |
| 2xlpB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 46.0 | 2.89e-01 | 85.5% | 44.6% |
| 2m89A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 50.0 | 3.89e-01 | 95.2% | 75.4% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.58 | 40.0 | 3.70e-01 | 88.7% | 56.2% |
| 2lydA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 46.0 | 3.71e-01 | 95.2% | 61.2% |
| 7wa9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 47.0 | 3.67e-01 | 95.2% | 80.1% |
| 2gfgA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.56 | 41.0 | 3.08e-01 | 83.9% | 67.0% |
| 1epaA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 45.0 | 3.57e-01 | 100.0% | 68.8% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.55 | 46.0 | 4.00e-01 | 100.0% | 62.5% |
| 1pbyA02 | 2.40.128.120 | Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 | 0.54 | 46.0 | 3.97e-01 | 100.0% | 76.4% |
| 2lfuA02 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.54 | 45.0 | 3.69e-01 | 100.0% | 89.1% |
| 1p6pA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 44.0 | 3.63e-01 | 96.8% | 98.4% |
| 2v43A01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.53 | 44.0 | 3.30e-01 | 100.0% | 72.7% |
| 2i52B00 | 3.30.1300.20 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) | 0.50 | 39.0 | 3.24e-01 | 87.1% | 54.3% |
ECOD (71)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5036498 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.84 | 71.0 | 6.57e-01 | 100.0% | 73.3% |
| 3885050 | 4.1.1.360 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 | 0.84 | 66.0 | 4.57e-01 | 95.2% | 29.1% |
| 4093836 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.81 | 69.0 | 7.02e-01 | 100.0% | 95.0% |
| 3516333 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 61.0 | 6.46e-01 | 100.0% | 90.9% |
| 3411714 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 63.0 | 6.05e-01 | 95.2% | 74.3% |
| 3642926 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.79 | 66.0 | 4.58e-01 | 98.4% | 29.7% |
| 3671396 | 4.1.1.316 ↗ | beta barrels › SH3 › SH3 › SH3 › PUB62-63_C | 0.78 | 67.0 | 6.34e-01 | 100.0% | 78.1% |
| 3482225 | 4.1.1.300 ↗ | beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C | 0.78 | 65.0 | 5.02e-01 | 100.0% | 43.1% |
| 3829476 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.77 | 64.0 | 4.51e-01 | 98.4% | 31.4% |
| 3348456 | 4.1.1.322 ↗ | beta barrels › SH3 › SH3 › SH3 › GPKOW_C | 0.77 | 67.0 | 6.88e-01 | 100.0% | 96.7% |
| 3820066 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 67.0 | 6.86e-01 | 100.0% | 96.7% |
| 3935464 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 65.0 | 6.60e-01 | 95.2% | 95.0% |
| 3457163 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.76 | 67.0 | 6.08e-01 | 100.0% | 73.8% |
| 3819340 | 4.1.1.322 ↗ | beta barrels › SH3 › SH3 › SH3 › GPKOW_C | 0.76 | 65.0 | 5.12e-01 | 96.8% | 47.5% |
| 3828371 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.75 | 70.0 | 6.23e-01 | 100.0% | 75.3% |
| 3555931 | 4.1.1.322 ↗ | beta barrels › SH3 › SH3 › SH3 › GPKOW_C | 0.75 | 64.0 | 5.14e-01 | 100.0% | 49.6% |
| 3705404 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.74 | 65.0 | 4.24e-01 | 95.2% | 76.1% |
| 3669492 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.74 | 68.0 | 5.13e-01 | 100.0% | 45.0% |
| 3591693 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.74 | 67.0 | 5.20e-01 | 100.0% | 70.8% |
| 3834563 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.73 | 66.0 | 6.02e-01 | 98.4% | 80.0% |
| 3601624 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 68.0 | 5.54e-01 | 100.0% | 70.5% |
| 3608011 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 67.0 | 5.28e-01 | 100.0% | 65.0% |
| 3511551 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 65.0 | 6.68e-01 | 100.0% | 100.0% |
| 3713672 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 66.0 | 5.26e-01 | 100.0% | 63.5% |
| 3941320 | 4.1.1.303 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus | 0.71 | 58.0 | 5.48e-01 | 100.0% | 73.3% |
| 3826751 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.71 | 66.0 | 6.01e-01 | 100.0% | 81.2% |
| 3171604 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.71 | 60.0 | 5.64e-01 | 91.9% | 89.3% |
| 3815495 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.71 | 64.0 | 6.15e-01 | 98.4% | 88.6% |
| 531 | 4.1.1.281 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_KALRN | 0.71 | 60.0 | 5.62e-01 | 91.9% | 83.8% |
| 3879132 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.70 | 60.0 | 5.59e-01 | 91.9% | 84.0% |
| 3214474 | 4.1.1.390 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29855 | 0.70 | 63.0 | 5.27e-01 | 98.4% | 60.0% |
| 3561094 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.70 | 60.0 | 5.61e-01 | 93.5% | 85.3% |
| 3719639 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 64.0 | 5.02e-01 | 100.0% | 73.6% |
| 3597002 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 64.0 | 5.21e-01 | 100.0% | 61.8% |
| 157323 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 58.0 | 5.68e-01 | 91.9% | 94.1% |
| 3955235 | 4.1.1.183 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4926 | 0.69 | 64.0 | 5.80e-01 | 100.0% | 77.5% |
| 3607307 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.68 | 57.0 | 5.48e-01 | 90.3% | 88.6% |
| 4003717 | 4.1.1.50 ↗ | beta barrels › SH3 › SH3 › SH3 › MIB_HERC2 | 0.67 | 62.0 | 5.76e-01 | 100.0% | 85.3% |
| 3605922 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 61.0 | 5.15e-01 | 100.0% | 68.0% |
| 3236896 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 57.0 | 5.46e-01 | 91.9% | 87.1% |
| 3615649 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 49.0 | 5.18e-01 | 98.4% | 89.1% |
| 3575253 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.66 | 57.0 | 5.45e-01 | 91.9% | 91.4% |
| 3871253 | 220.1.1.122 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › C2_SHIP1-2_first | 0.65 | 53.0 | 4.13e-01 | 91.9% | 60.7% |
| 3996280 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.65 | 56.0 | 4.66e-01 | 100.0% | 55.5% |
| 4887870 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.62 | 51.0 | 3.92e-01 | 100.0% | 66.1% |
| 3471615 | 220.1.1.158 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 | 0.61 | 49.0 | 4.11e-01 | 93.5% | 72.2% |
| 3592221 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 48.0 | 4.01e-01 | 93.5% | 65.3% |
| 3189324 | 375.1.1.319 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Saf4_Yju2 | 0.59 | 41.0 | 4.01e-01 | 79.0% | 65.7% |
| 3479384 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 43.0 | 3.04e-01 | 82.3% | 46.2% |
| 3745663 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.56 | 48.0 | 3.58e-01 | 100.0% | 52.6% |
| 3538619 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.56 | 45.0 | 3.69e-01 | 95.2% | 66.9% |
| 4012524 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.55 | 45.0 | 2.82e-01 | 91.9% | 27.9% |
| 3388787 | 719.1.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XRCC4 | 0.55 | 45.0 | 3.68e-01 | 95.2% | 65.6% |
| 3740122 | 220.1.1.92 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH | 0.55 | 46.0 | 3.75e-01 | 100.0% | 72.9% |
| 4986209 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 44.0 | 3.61e-01 | 93.5% | 71.8% |
| 3940504 | 220.1.1.36 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 | 0.54 | 45.0 | 3.21e-01 | 98.4% | 51.6% |
| 3610987 | 719.1.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain | 0.54 | 45.0 | 3.71e-01 | 98.4% | 68.8% |
| 3845542 | 220.1.1.38 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N | 0.54 | 43.0 | 3.81e-01 | 93.5% | 82.0% |
| 4030625 | 219.1.1.97 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase | 0.54 | 43.0 | 2.99e-01 | 90.3% | 47.0% |
| 3468426 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.54 | 45.0 | 2.88e-01 | 96.8% | 24.1% |
| 4027822 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.54 | 42.0 | 2.99e-01 | 87.1% | 89.5% |
| 3412900 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.54 | 42.0 | 3.62e-01 | 93.5% | 76.5% |
| 3702239 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.53 | 44.0 | 3.52e-01 | 95.2% | 71.9% |
| 3813657 | 220.1.1.172 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PRMT_N | 0.53 | 42.0 | 3.63e-01 | 93.5% | 76.4% |
| 3219683 | 220.1.1.2 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 | 0.52 | 44.0 | 3.41e-01 | 95.2% | 52.9% |
| 3719460 | 101.1.12.0 ↗ | alpha arrays › HTH › HTH › HTH motif inserted in other structures | 0.52 | 43.0 | 3.56e-01 | 100.0% | 70.8% |
| 4945471 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 41.0 | 4.14e-01 | 93.5% | 95.4% |
| 4979182 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.51 | 42.0 | 2.69e-01 | 100.0% | 24.5% |
| 4221174 | 243.19.1.0 ↗ | a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains | 0.51 | 40.0 | 3.61e-01 | 91.9% | 72.6% |
| 5045854 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.50 | 40.0 | 3.77e-01 | 93.5% | 85.0% |
| 3480143 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.50 | 39.0 | 3.07e-01 | 88.7% | 93.3% |
D2
medium
residues 69-129
Domain cluster:
representative