←Back to structures
SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00478
Bact-VirSR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00478
Identity
- Kingdom:
- phage
Quality
88.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-130
Domain cluster:
rep: JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00299__D31-130
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4g54A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.65 | 46.0 | 4.25e-01 | 74.5% | 81.6% |
| 2jtcA00 | 3.90.70.50 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) | 0.64 | 46.0 | 3.33e-01 | 73.5% | 80.2% |
| 2j7qA00 | 3.90.70.120 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.59 | 49.0 | 3.68e-01 | 88.8% | 81.4% |
| 2evrA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.56 | 46.0 | 4.06e-01 | 90.8% | 71.6% |
| 1z1dB00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.53 | 37.0 | 3.43e-01 | 73.5% | 61.8% |
| 2n3gA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 30.0 | 3.38e-01 | 85.7% | 79.2% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3804711 | 219.1.1.113 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF28979 | 0.72 | 51.0 | 3.72e-01 | 73.5% | 87.5% |
| 4063483 | 219.1.1.10 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C10 | 0.64 | 46.0 | 3.30e-01 | 73.5% | 77.2% |
| 2770320 | 219.1.1.39 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF1175 | 0.61 | 44.0 | 3.56e-01 | 75.5% | 78.1% |
| 5075281 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.59 | 41.0 | 2.90e-01 | 71.4% | 43.2% |
| 4267105 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.54 | 29.0 | 2.21e-01 | 77.6% | 21.3% |
| 3978997 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.53 | 33.0 | 3.41e-01 | 71.4% | 65.3% |
| 4207610 | 274.1.1.13 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH | 0.53 | 43.0 | 3.78e-01 | 90.8% | 89.3% |
| 3223055 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.51 | 36.0 | 2.10e-01 | 72.4% | 22.1% |
| 3484822 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.50 | 32.0 | 3.46e-01 | 76.5% | 77.5% |