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SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00530
Bact-VirSR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00530
Identity
- Kingdom:
- phage
Quality
73.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-89
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 44.0 | 5.06e-01 | 97.7% | 79.7% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 45.0 | 4.90e-01 | 100.0% | 74.0% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 45.0 | 5.36e-01 | 100.0% | 98.2% |
| 1mhnA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 45.0 | 5.28e-01 | 100.0% | 94.9% |
| 4c5eC02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 44.0 | 4.28e-01 | 98.9% | 58.3% |
| 1vwxA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 48.0 | 5.02e-01 | 100.0% | 78.8% |
| 2efiA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 44.0 | 4.20e-01 | 98.9% | 57.0% |
| 7afrX02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.68 | 45.0 | 5.17e-01 | 98.9% | 98.3% |
| 1wjrA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 46.0 | 4.09e-01 | 100.0% | 48.8% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.66 | 46.0 | 5.17e-01 | 100.0% | 95.5% |
| 1y71A00 | 2.30.30.430 | Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain | 0.63 | 44.0 | 4.09e-01 | 97.7% | 57.8% |
| 1lckA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 40.0 | 4.70e-01 | 93.1% | 96.6% |
| 1vl7A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.61 | 52.0 | 4.56e-01 | 95.4% | 94.1% |
| 3dmbA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.60 | 51.0 | 4.36e-01 | 95.4% | 82.9% |
| 3szeA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.60 | 51.0 | 3.51e-01 | 94.3% | 41.6% |
| 1vq8Q00 | 2.30.30.70 | Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 | 0.60 | 44.0 | 4.27e-01 | 100.0% | 70.5% |
| 2rdeA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.59 | 51.0 | 4.65e-01 | 92.0% | 79.3% |
| 3dnhA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 51.0 | 4.28e-01 | 96.6% | 82.1% |
| 2ig6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 50.0 | 4.33e-01 | 96.6% | 82.5% |
| 2imlA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 51.0 | 4.74e-01 | 96.6% | 93.8% |
| 2arzA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 50.0 | 4.24e-01 | 96.6% | 83.3% |
| 2rdlA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 50.0 | 4.50e-01 | 93.1% | 86.4% |
| 2l1tA00 | 2.30.110.70 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.58 | 51.0 | 4.76e-01 | 97.7% | 88.1% |
| 1fonA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 49.0 | 4.44e-01 | 93.1% | 94.9% |
| 5yjlD01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 50.0 | 4.27e-01 | 96.6% | 78.9% |
| 5brrE01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 49.0 | 4.26e-01 | 93.1% | 88.8% |
| 1wv4B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 49.0 | 4.11e-01 | 95.4% | 71.4% |
| 1wczA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 49.0 | 4.48e-01 | 93.1% | 70.4% |
| 3fzzA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 49.0 | 4.45e-01 | 94.3% | 87.5% |
| 1a7sA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 48.0 | 4.47e-01 | 94.3% | 86.6% |
| 2mc2A00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.55 | 48.0 | 3.70e-01 | 98.9% | 99.5% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 37.0 | 3.91e-01 | 95.4% | 80.3% |
| 1sp4B00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.54 | 48.0 | 3.66e-01 | 100.0% | 44.9% |
| 4dzdA01 | 3.30.70.1200 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 | 0.53 | 34.0 | 3.70e-01 | 83.9% | 80.0% |
| 6y2kA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 30.0 | 3.67e-01 | 83.9% | 100.0% |
| 4rt0A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.50 | 40.0 | 3.77e-01 | 88.5% | 76.1% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3554026 | 4.1.1.233 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N | 0.77 | 50.0 | 5.86e-01 | 98.9% | 95.0% |
| 3907619 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.76 | 46.0 | 4.68e-01 | 100.0% | 62.4% |
| 3841414 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.72 | 47.0 | 5.17e-01 | 97.7% | 82.9% |
| 4574546 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.68 | 47.0 | 5.30e-01 | 100.0% | 95.4% |
| 3923813 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 47.0 | 5.36e-01 | 98.9% | 96.9% |
| 3619619 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 44.0 | 4.89e-01 | 100.0% | 84.3% |
| 3587906 | 4.1.1.46 ↗ | beta barrels › SH3 › SH3 › SH3 › VEG | 0.67 | 50.0 | 5.22e-01 | 100.0% | 86.3% |
| 3459099 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.67 | 54.0 | 5.06e-01 | 98.9% | 71.4% |
| 3631165 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 52.0 | 5.27e-01 | 100.0% | 84.7% |
| 3924213 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.65 | 42.0 | 4.13e-01 | 100.0% | 60.0% |
| 3284813 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 52.0 | 5.50e-01 | 96.6% | 98.7% |
| 3638396 | 4.1.1.303 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus | 0.64 | 43.0 | 4.94e-01 | 97.7% | 98.3% |
| 3437523 | 4.1.1.303 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus | 0.64 | 42.0 | 4.65e-01 | 98.9% | 84.3% |
| 3357709 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.64 | 49.0 | 5.00e-01 | 100.0% | 83.5% |
| 4069560 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 47.0 | 5.08e-01 | 100.0% | 92.0% |
| 3310575 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.63 | 55.0 | 5.13e-01 | 96.6% | 77.1% |
| 3672735 | 4.1.1.303 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus | 0.63 | 42.0 | 4.72e-01 | 98.9% | 90.8% |
| 3363751 | 4.1.1.246 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin | 0.63 | 58.0 | 5.42e-01 | 100.0% | 87.6% |
| 3807651 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.63 | 54.0 | 4.94e-01 | 98.9% | 71.8% |
| 5067227 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 45.0 | 4.61e-01 | 100.0% | 78.3% |
| 5023947 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.62 | 52.0 | 4.11e-01 | 94.3% | 45.9% |
| 3822363 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.62 | 54.0 | 4.30e-01 | 96.6% | 82.3% |
| 3296140 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.62 | 57.0 | 3.54e-01 | 100.0% | 27.0% |
| 3276050 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.61 | 52.0 | 3.78e-01 | 92.0% | 44.2% |
| 5074039 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 45.0 | 4.80e-01 | 100.0% | 89.3% |
| 3719783 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 50.0 | 4.91e-01 | 97.7% | 81.9% |
| 3370374 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.60 | 55.0 | 4.72e-01 | 100.0% | 65.9% |
| 5050368 | 4.1.1.14 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e | 0.60 | 44.0 | 4.26e-01 | 100.0% | 68.4% |
| 3664869 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.60 | 56.0 | 4.06e-01 | 100.0% | 52.3% |
| 4283343 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.60 | 48.0 | 5.00e-01 | 100.0% | 92.5% |
| 5074282 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 36.0 | 4.40e-01 | 77.0% | 96.4% |
| 1096951 | 1.1.5.13 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S6 | 0.60 | 51.0 | 3.66e-01 | 94.3% | 49.6% |
| 3870111 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.60 | 51.0 | 3.69e-01 | 94.3% | 47.6% |
| 3222210 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.60 | 42.0 | 4.66e-01 | 100.0% | 92.9% |
| 5053266 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.59 | 51.0 | 4.24e-01 | 98.9% | 100.0% |
| 3244773 | 1.1.5.49 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 | 0.59 | 50.0 | 3.53e-01 | 93.1% | 33.1% |
| 3624306 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.58 | 51.0 | 4.58e-01 | 100.0% | 68.8% |
| 3233235 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.57 | 49.0 | 3.39e-01 | 94.3% | 40.5% |
| 3415399 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.57 | 48.0 | 3.59e-01 | 93.1% | 42.3% |
| 3633294 | 219.1.1.93 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 | 0.55 | 44.0 | 3.75e-01 | 95.4% | 53.6% |
| 3691426 | 4.1.1.179 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF6590 | 0.54 | 49.0 | 3.88e-01 | 100.0% | 86.3% |
| 5063188 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.54 | 46.0 | 3.54e-01 | 97.7% | 54.0% |
| 3808601 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 46.0 | 4.67e-01 | 100.0% | 95.3% |
| 3469125 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.53 | 45.0 | 4.01e-01 | 95.4% | 87.7% |
| 3480657 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 47.0 | 4.14e-01 | 96.6% | 69.6% |
| 5027789 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.53 | 45.0 | 4.27e-01 | 97.7% | 79.0% |
| 3469033 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.53 | 45.0 | 3.30e-01 | 96.6% | 48.8% |
| 3816594 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.53 | 45.0 | 3.33e-01 | 96.6% | 51.2% |
| 3247407 | 220.1.1.50 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 | 0.52 | 45.0 | 4.00e-01 | 95.4% | 72.0% |
| 3197517 | 219.1.1.129 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF7770 | 0.51 | 37.0 | 3.42e-01 | 95.4% | 57.6% |
| 3785769 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.50 | 43.0 | 3.61e-01 | 94.3% | 83.3% |