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SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00575
Bact-VirSR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00575
Identity
- Kingdom:
- phage
Quality
65.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-147
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.76 | 71.0 | 6.59e-01 | 100.0% | 96.0% |
| 4ry2A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.73 | 63.0 | 6.42e-01 | 95.8% | 92.9% |
| 3bbaA00 | 3.90.70.50 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) | 0.72 | 66.0 | 5.44e-01 | 99.3% | 94.3% |
| 5cvmA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.65 | 58.0 | 4.51e-01 | 97.2% | 99.7% |
| 3ihpA03 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.65 | 57.0 | 4.38e-01 | 97.9% | 98.5% |
| 2k1gA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.64 | 52.0 | 5.44e-01 | 100.0% | 94.6% |
| 6heiA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.64 | 56.0 | 4.26e-01 | 95.8% | 90.4% |
| 4g54A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.64 | 46.0 | 4.88e-01 | 88.7% | 85.6% |
| 2gfoA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.63 | 55.0 | 4.25e-01 | 97.2% | 97.1% |
| 4hffA00 | 3.90.1720.70 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.61 | 56.0 | 5.43e-01 | 100.0% | 97.4% |
| 4cshA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.60 | 56.0 | 5.32e-01 | 100.0% | 95.7% |
| 2lrrA00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.56 | 25.0 | 3.53e-01 | 86.6% | 87.1% |
| 3zoqC00 | 6.20.250.30 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.55 | 23.0 | 3.50e-01 | 98.6% | 100.0% |
| 2mhhA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.53 | 30.0 | 3.49e-01 | 83.8% | 79.2% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7380 | 219.1.1.34 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C47 | 0.76 | 71.0 | 6.59e-01 | 100.0% | 96.0% |
| 3589934 | 219.1.1.34 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C47 | 0.74 | 68.0 | 6.37e-01 | 99.3% | 97.0% |
| 3970579 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.73 | 66.0 | 6.55e-01 | 97.9% | 93.3% |
| 4256943 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.72 | 60.0 | 6.12e-01 | 90.8% | 89.3% |
| 4318152 | 221.1.1.99 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UCH | 0.67 | 59.0 | 4.12e-01 | 97.2% | 68.4% |
| 4009281 | 219.1.1.65 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like | 0.67 | 48.0 | 5.39e-01 | 87.3% | 99.0% |
| 3880439 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.67 | 59.0 | 4.06e-01 | 97.2% | 90.0% |
| 3739929 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.66 | 58.0 | 4.55e-01 | 97.2% | 95.6% |
| 4021527 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.66 | 60.0 | 4.28e-01 | 98.6% | 97.3% |
| 3978624 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.66 | 54.0 | 5.66e-01 | 88.7% | 95.4% |
| 3716949 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.65 | 58.0 | 4.47e-01 | 98.6% | 99.7% |
| 4024708 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.65 | 58.0 | 4.34e-01 | 99.3% | 99.5% |
| 3814705 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.65 | 58.0 | 4.38e-01 | 97.9% | 97.1% |
| 2773985 | 219.1.1.43 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CoV_peptidase | 0.65 | 58.0 | 4.86e-01 | 98.6% | 84.3% |
| 4029745 | 219.1.1.112 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 | 0.65 | 58.0 | 4.43e-01 | 99.3% | 98.2% |
| 3303851 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.65 | 58.0 | 4.47e-01 | 99.3% | 96.7% |
| 3903582 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.65 | 57.0 | 4.26e-01 | 95.8% | 99.7% |
| 3408112 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.65 | 58.0 | 4.47e-01 | 98.6% | 95.7% |
| 3487286 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.65 | 57.0 | 4.32e-01 | 97.2% | 98.3% |
| 3404995 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.65 | 58.0 | 4.35e-01 | 98.6% | 95.8% |
| 3793204 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.65 | 57.0 | 4.55e-01 | 97.9% | 99.3% |
| 3182704 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.65 | 57.0 | 3.71e-01 | 96.5% | 60.3% |
| 3921471 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.65 | 57.0 | 4.32e-01 | 97.9% | 96.6% |
| 3401777 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.65 | 58.0 | 4.33e-01 | 99.3% | 96.7% |
| 3177128 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.65 | 57.0 | 4.21e-01 | 98.6% | 92.2% |
| 3737735 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.65 | 58.0 | 4.28e-01 | 97.9% | 94.6% |
| 3660442 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.65 | 58.0 | 4.52e-01 | 99.3% | 98.4% |
| 4011568 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.65 | 57.0 | 4.38e-01 | 97.9% | 98.8% |
| 3797595 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.65 | 58.0 | 4.49e-01 | 100.0% | 99.4% |
| 3177989 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.65 | 57.0 | 4.05e-01 | 98.6% | 93.8% |
| 4023904 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.65 | 58.0 | 4.21e-01 | 100.0% | 96.3% |
| 3788099 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.65 | 57.0 | 4.20e-01 | 98.6% | 98.0% |
| 3622020 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.64 | 58.0 | 4.49e-01 | 99.3% | 99.7% |
| 3178434 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.64 | 57.0 | 4.34e-01 | 98.6% | 96.6% |
| 3694580 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.64 | 58.0 | 4.24e-01 | 98.6% | 97.1% |
| 3594089 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.64 | 57.0 | 4.33e-01 | 96.5% | 99.4% |
| 3247609 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.64 | 57.0 | 4.30e-01 | 97.9% | 90.6% |
| 3484542 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.64 | 57.0 | 4.39e-01 | 98.6% | 96.4% |
| 3890729 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.64 | 58.0 | 4.22e-01 | 99.3% | 97.2% |
| 3928073 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.64 | 56.0 | 4.35e-01 | 96.5% | 95.7% |
| 3272442 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.64 | 57.0 | 4.42e-01 | 99.3% | 96.0% |
| 3271037 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.64 | 56.0 | 4.04e-01 | 97.2% | 99.1% |
| 3652683 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.64 | 58.0 | 4.23e-01 | 99.3% | 99.0% |
| 4613056 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.64 | 56.0 | 4.02e-01 | 97.2% | 77.0% |
| 3418449 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.64 | 57.0 | 4.06e-01 | 98.6% | 74.5% |
| 3997372 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.64 | 56.0 | 4.19e-01 | 97.9% | 90.1% |
| 3621466 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.64 | 53.0 | 3.96e-01 | 90.8% | 100.0% |
| 3382767 | 219.1.1.112 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 | 0.64 | 56.0 | 4.36e-01 | 98.6% | 94.5% |
| 3762030 | 219.1.1.14 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin | 0.64 | 50.0 | 5.27e-01 | 98.6% | 92.8% |
| 4012827 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.64 | 55.0 | 3.97e-01 | 95.8% | 88.8% |
| 3271978 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.64 | 57.0 | 4.41e-01 | 99.3% | 100.0% |
| 224033 | 219.1.1.65 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like | 0.64 | 46.0 | 5.01e-01 | 88.7% | 92.2% |
| 3255440 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.63 | 56.0 | 4.24e-01 | 98.6% | 94.2% |
| 4000435 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.63 | 57.0 | 4.20e-01 | 100.0% | 97.4% |
| 3166921 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.63 | 56.0 | 4.35e-01 | 99.3% | 97.0% |
| 3734153 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.63 | 55.0 | 4.30e-01 | 96.5% | 96.2% |
| 3975571 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.62 | 58.0 | 5.21e-01 | 100.0% | 80.5% |
| 3615154 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.62 | 55.0 | 5.10e-01 | 97.9% | 94.6% |
| 3390045 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.62 | 54.0 | 4.13e-01 | 97.2% | 99.7% |
| 4092486 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.53 | 37.0 | 3.41e-01 | 70.4% | 72.2% |