←Back to structures
SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00584
Bact-VirSR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00584
Identity
- Kingdom:
- phage
Quality
57.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 26-67
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qypA00 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.69 | 48.0 | 4.35e-01 | 73.8% | 63.2% |
| 5kvsA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.68 | 47.0 | 3.20e-01 | 73.8% | 21.0% |
| 1x0tA02 | 6.20.50.20 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.65 | 45.0 | 4.44e-01 | 73.8% | 82.2% |
| 3mx7A00 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.64 | 44.0 | 3.52e-01 | 73.8% | 90.0% |
| 1cwvA05 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.63 | 47.0 | 3.62e-01 | 100.0% | 35.0% |
| 2grgA01 | 3.40.1840.10 | Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like | 0.61 | 44.0 | 3.57e-01 | 97.6% | 39.8% |
| 3n8hA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.61 | 41.0 | 3.55e-01 | 73.8% | 84.2% |
| 4p78C00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.60 | 41.0 | 3.67e-01 | 73.8% | 53.0% |
| 3hpeA00 | 2.40.128.110 | Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like | 0.60 | 43.0 | 2.95e-01 | 78.6% | 19.5% |
| 4e2oA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.59 | 41.0 | 3.32e-01 | 73.8% | 36.4% |
| 2r5vA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.59 | 40.0 | 2.85e-01 | 73.8% | 22.0% |
| 2dk1A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.59 | 41.0 | 3.93e-01 | 85.7% | 64.0% |
| 5i4dA02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.58 | 40.0 | 3.42e-01 | 73.8% | 42.1% |
| 1e8oD00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.57 | 40.0 | 3.40e-01 | 76.2% | 51.3% |
| 7byjA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 39.0 | 3.16e-01 | 73.8% | 42.1% |
| 5c3vA01 | 3.30.800.10 | Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta | 0.56 | 38.0 | 2.65e-01 | 73.8% | 20.4% |
| 1avaA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 36.0 | 3.39e-01 | 73.8% | 50.0% |
| 2bzgA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 42.0 | 2.75e-01 | 95.2% | 35.4% |
| 4ks7A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 39.0 | 3.06e-01 | 88.1% | 94.9% |
| 4nozB01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.51 | 32.0 | 3.06e-01 | 76.2% | 48.1% |
| 3zleA03 | 2.10.70.70 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.51 | 36.0 | 3.69e-01 | 88.1% | 89.7% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5028956 | 375.8.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta | 0.78 | 52.0 | 5.48e-01 | 71.4% | 82.9% |
| 5030309 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 51.0 | 5.43e-01 | 73.8% | 85.7% |
| 4025781 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 49.0 | 4.35e-01 | 73.8% | 53.3% |
| 3732527 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 47.0 | 4.94e-01 | 73.8% | 88.6% |
| 3933561 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 56.0 | 4.30e-01 | 100.0% | 71.4% |
| 3425088 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.65 | 43.0 | 3.88e-01 | 71.4% | 46.2% |
| 4381486 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.65 | 45.0 | 3.52e-01 | 97.6% | 35.2% |
| None | — | 0.64 | 51.0 | 2.98e-01 | 90.5% | 65.0% | |
| 4948056 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 44.0 | 3.39e-01 | 73.8% | 39.0% |
| 4487255 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.63 | 44.0 | 3.72e-01 | 76.2% | 61.3% |
| 3436239 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.63 | 43.0 | 2.49e-01 | 73.8% | 8.2% |
| 4477176 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.61 | 41.0 | 3.36e-01 | 97.6% | 35.3% |
| 4977068 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.61 | 48.0 | 3.83e-01 | 100.0% | 71.2% |
| 4639808 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.60 | 44.0 | 3.47e-01 | 97.6% | 37.8% |
| 3933100 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.60 | 41.0 | 3.60e-01 | 76.2% | 64.3% |
| 3640752 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.59 | 44.0 | 2.78e-01 | 100.0% | 14.0% |
| 5043972 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.58 | 46.0 | 3.74e-01 | 100.0% | 74.7% |
| 3633647 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.58 | 39.0 | 3.53e-01 | 73.8% | 60.0% |
| 4932876 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.56 | 44.0 | 3.42e-01 | 100.0% | 64.3% |
| 3925738 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 40.0 | 3.06e-01 | 100.0% | 30.0% |
| 3549045 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.54 | 39.0 | 3.00e-01 | 81.0% | 34.5% |
| 3797523 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.52 | 36.0 | 2.75e-01 | 78.6% | 26.9% |
| 4376478 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.52 | 36.0 | 2.97e-01 | 76.2% | 41.1% |
| 5012155 | 4221.1.1.0 ↗ | a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like | 0.51 | 41.0 | 3.56e-01 | 100.0% | 55.4% |
| 3641336 | 2003.1.5.353 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PIP5K | 0.51 | 35.0 | 2.39e-01 | 78.6% | 18.0% |
| 3367730 | 5.1.1.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › FBA_1 | 0.50 | 42.0 | 2.89e-01 | 100.0% | 52.7% |