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SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00592
Bact-VirSR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00592
Identity
- Kingdom:
- phage
Quality
89.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-46
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rr7A02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.77 | 57.0 | 5.62e-01 | 93.2% | 75.0% |
| 2k85A00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.74 | 60.0 | 5.41e-01 | 95.5% | 78.5% |
| 1ignB02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.73 | 59.0 | 4.78e-01 | 95.5% | 54.3% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 63.0 | 4.88e-01 | 97.7% | 55.8% |
| 4g6qA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 66.0 | 5.18e-01 | 100.0% | 70.1% |
| 1j5yA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 62.0 | 5.54e-01 | 100.0% | 76.6% |
| 1u78A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 57.0 | 5.70e-01 | 93.2% | 91.1% |
| 2p5kA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 60.0 | 5.39e-01 | 100.0% | 92.1% |
| 3eyyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 58.0 | 4.87e-01 | 100.0% | 76.8% |
| 1ucrB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 57.0 | 4.97e-01 | 100.0% | 78.7% |
| 2lvsA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 55.0 | 5.15e-01 | 97.7% | 76.8% |
| 1fi2A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.65 | 53.0 | 3.49e-01 | 95.5% | 56.2% |
| 3mw6B00 | 1.10.1710.10 | Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain | 0.64 | 52.0 | 4.17e-01 | 95.5% | 46.8% |
| 2af7D00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.64 | 54.0 | 4.01e-01 | 100.0% | 45.5% |
| 1mkmB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 52.0 | 4.52e-01 | 100.0% | 71.1% |
| 3vokA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.63 | 51.0 | 3.53e-01 | 97.7% | 59.1% |
| 3tqnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 53.0 | 4.61e-01 | 100.0% | 80.8% |
| 3by6C01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 51.0 | 4.43e-01 | 100.0% | 76.6% |
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.61 | 48.0 | 3.90e-01 | 93.2% | 55.3% |
| 2doeA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.59 | 46.0 | 3.96e-01 | 95.5% | 62.7% |
| 1wgxA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 46.0 | 4.07e-01 | 93.2% | 63.0% |
| 2gytA01 | 1.10.287.2070 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 45.0 | 4.03e-01 | 100.0% | 63.4% |
| 3c3vA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 43.0 | 2.75e-01 | 88.6% | 20.7% |
| 4ixjA01 | 3.30.1300.80 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.51 | 40.0 | 3.48e-01 | 95.5% | 68.8% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938254 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.80 | 64.0 | 5.55e-01 | 100.0% | 57.1% |
| 3783341 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.80 | 64.0 | 6.40e-01 | 95.5% | 86.7% |
| 3406014 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.80 | 69.0 | 6.00e-01 | 95.5% | 69.2% |
| 3259551 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.78 | 64.0 | 5.28e-01 | 93.2% | 52.5% |
| 5062051 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 66.0 | 5.86e-01 | 100.0% | 84.6% |
| 3652823 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 65.0 | 5.37e-01 | 100.0% | 62.5% |
| 4098952 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.75 | 64.0 | 5.33e-01 | 100.0% | 62.5% |
| 5053846 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.74 | 63.0 | 5.18e-01 | 100.0% | 67.1% |
| 3309668 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.74 | 64.0 | 5.04e-01 | 100.0% | 52.6% |
| 2613 | 101.1.2.105 ↗ | alpha arrays › HTH › HTH › winged helix domain › MotA_activ | 0.73 | 63.0 | 4.88e-01 | 97.7% | 55.8% |
| 3738676 | 101.1.1.207 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF6581 | 0.72 | 59.0 | 4.51e-01 | 95.5% | 45.5% |
| 3759250 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.71 | 56.0 | 5.60e-01 | 93.2% | 93.3% |
| 4968863 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 59.0 | 5.27e-01 | 100.0% | 83.1% |
| 3501315 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.70 | 58.0 | 4.59e-01 | 100.0% | 60.0% |
| 3640032 | 101.1.3.9 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Myb_DNA-bind_8 | 0.69 | 58.0 | 5.46e-01 | 97.7% | 89.1% |
| 3686518 | 101.1.2.384 ↗ | alpha arrays › HTH › HTH › winged helix domain › Myb_DNA-bind_8 | 0.69 | 56.0 | 5.22e-01 | 90.9% | 83.6% |
| 5039847 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.68 | 54.0 | 5.12e-01 | 95.5% | 78.2% |
| 3693702 | 101.1.2.384 ↗ | alpha arrays › HTH › HTH › winged helix domain › Myb_DNA-bind_8 | 0.68 | 58.0 | 5.25e-01 | 97.7% | 83.3% |
| 4929470 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.66 | 53.0 | 4.24e-01 | 100.0% | 51.4% |
| 4928591 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 53.0 | 4.85e-01 | 100.0% | 84.6% |
| 3691061 | 101.1.1.216 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_8 | 0.65 | 54.0 | 5.14e-01 | 97.7% | 90.9% |
| 4982611 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 54.0 | 3.93e-01 | 100.0% | 39.6% |
| None | — | 0.57 | 48.0 | 3.04e-01 | 100.0% | 26.7% | |
| 4498620 | 4230.1.1.3 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 | 0.56 | 39.0 | 3.43e-01 | 75.0% | 61.4% |
| 4332068 | 109.4.1.758 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Med26 | 0.50 | 39.0 | 2.84e-01 | 100.0% | 27.9% |