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SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00593
Bact-VirSR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00593
Identity
- Kingdom:
- phage
Quality
83.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-104
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1or4B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 36.0 | 3.13e-01 | 83.3% | 41.8% |
| 2f2cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.55 | 34.0 | 3.36e-01 | 80.4% | 56.0% |
| 2m7bA00 | 1.10.10.1920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 34.0 | 3.77e-01 | 97.1% | 88.3% |
| 1n83A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.50 | 44.0 | 3.38e-01 | 100.0% | 77.7% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3985321 | 3579.1.1.29 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › ThrE_2 | 0.64 | 41.0 | 3.65e-01 | 100.0% | 45.5% |
| 5016020 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.60 | 42.0 | 3.52e-01 | 98.0% | 41.7% |
| 3388396 | 101.1.1.485 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_22 | 0.60 | 31.0 | 3.64e-01 | 81.4% | 72.1% |
| 3602968 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.57 | 43.0 | 4.07e-01 | 100.0% | 66.7% |
| 3594732 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.56 | 36.0 | 3.07e-01 | 77.5% | 38.8% |
| 3573730 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.56 | 36.0 | 3.96e-01 | 91.2% | 82.5% |
| 3486193 | 188.1.1.0 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain | 0.56 | 49.0 | 3.78e-01 | 100.0% | 82.0% |
| 3502001 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.55 | 35.0 | 3.91e-01 | 91.2% | 82.5% |
| 3839095 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.53 | 40.0 | 3.40e-01 | 100.0% | 46.9% |