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SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00595

Bact-Vir

SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00595

Identity

Kingdom:
phage

Quality

78.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-62
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7sk7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.69 47.0 2.93e-01 72.1% 34.4%
2iz4A02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.63 44.0 4.52e-01 93.0% 78.6%
6rwcA02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 40.0 4.19e-01 95.3% 82.1%
3sfvB01 3.30.450.390 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 44.0 3.19e-01 90.7% 53.5%
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.53 38.0 2.54e-01 79.1% 35.5%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 36.0 3.34e-01 74.4% 64.5%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 36.0 3.25e-01 74.4% 57.1%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 35.0 2.99e-01 74.4% 55.8%
1cb8A03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.51 36.0 3.00e-01 93.0% 81.8%
2psbA00 3.50.90.10 Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like 0.50 41.0 2.62e-01 100.0% 75.5%
3pvlA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 34.0 2.96e-01 74.4% 57.9%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4459062 387.1.3.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Colipase-like 0.79 54.0 5.59e-01 72.1% 77.5%
3239705 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.73 56.0 5.77e-01 97.7% 90.0%
3994040 387.1.3.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Colipase-like 0.73 55.0 5.50e-01 97.7% 80.0%
3508507 389.1.1.1 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF 0.70 51.0 5.30e-01 93.0% 85.0%
4969218 375.1.1.85 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Auto_anti-p27 0.63 42.0 4.49e-01 72.1% 85.7%
3860784 376.1.6.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR_1 0.59 47.0 4.24e-01 95.3% 81.5%
5057901 375.10.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha 0.57 39.0 3.74e-01 76.7% 60.0%
3216746 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 38.0 3.56e-01 74.4% 69.1%
5067229 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 39.0 3.90e-01 76.7% 75.6%
4950397 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 40.0 3.89e-01 90.7% 87.3%
3267385 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.52 36.0 2.63e-01 74.4% 55.9%
3820010 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.52 38.0 2.80e-01 90.7% 82.5%
5058926 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.52 35.0 3.14e-01 76.7% 70.7%
4459347 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.51 42.0 2.72e-01 100.0% 60.4%
3273247 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 37.0 2.73e-01 86.0% 85.3%