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SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00631
Bact-VirSR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00631
Identity
- Kingdom:
- phage
Quality
78.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-93
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.68 | 56.0 | 5.58e-01 | 87.9% | 89.1% |
| 3ka7A02 | 3.90.660.50 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.61 | 46.0 | 3.53e-01 | 80.2% | 48.1% |
| 2hkeA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.60 | 44.0 | 3.42e-01 | 76.9% | 93.4% |
| 2pokA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 42.0 | 3.41e-01 | 72.5% | 100.0% |
| 3aqoA01 | 3.30.70.3400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 40.0 | 4.32e-01 | 72.5% | 100.0% |
| 7rsfA01 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 40.0 | 3.66e-01 | 71.4% | 100.0% |
| 1k8wA01 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.55 | 40.0 | 2.91e-01 | 74.7% | 56.0% |
| 1vqyB01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 37.0 | 3.71e-01 | 70.3% | 100.0% |
| 5k9fA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 41.0 | 3.94e-01 | 80.2% | 100.0% |
| 1q5yC00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.54 | 38.0 | 3.96e-01 | 72.5% | 100.0% |
| 3bdeB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 37.0 | 3.65e-01 | 72.5% | 98.0% |
| 3smzA03 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 47.0 | 4.61e-01 | 100.0% | 100.0% |
| 5ixuA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 39.0 | 3.81e-01 | 79.1% | 100.0% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4158495 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.81 | 66.0 | 6.64e-01 | 93.4% | 85.6% |
| 3496147 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.71 | 58.0 | 5.67e-01 | 87.9% | 95.0% |
| 4179225 | 807.1.1.0 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) | 0.68 | 36.0 | 4.70e-01 | 72.5% | 96.0% |
| 3252771 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.65 | 53.0 | 5.51e-01 | 87.9% | 96.5% |
| 3732370 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.64 | 39.0 | 4.63e-01 | 72.5% | 93.3% |
| 4981567 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.63 | 50.0 | 4.59e-01 | 87.9% | 69.6% |
| 4957896 | 304.3.1.4 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › MCR_D | 0.63 | 46.0 | 4.63e-01 | 75.8% | 90.0% |
| 4332439 | 304.28.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG | 0.60 | 42.0 | 4.28e-01 | 72.5% | 93.3% |
| 3896560 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.59 | 42.0 | 3.47e-01 | 80.2% | 40.6% |
| 3338688 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.59 | 38.0 | 4.36e-01 | 71.4% | 93.8% |
| 3409700 | 4114.1.1.2 ↗ | a+b two layers › PHP14-like › PHP14-like › PHP14-like › Ocnus | 0.58 | 46.0 | 4.30e-01 | 85.7% | 76.5% |
| 170105 | 304.4.1.14 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb | 0.57 | 39.0 | 3.89e-01 | 72.5% | 100.0% |
| 3281048 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.56 | 39.0 | 3.87e-01 | 72.5% | 93.9% |
| 4199730 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.56 | 42.0 | 4.03e-01 | 97.8% | 69.5% |
| 4928213 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.56 | 38.0 | 4.26e-01 | 71.4% | 100.0% |
| 4509594 | 304.28.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG | 0.56 | 38.0 | 3.91e-01 | 70.3% | 92.9% |
| 3595897 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.55 | 31.0 | 3.81e-01 | 72.5% | 90.9% |
| 4487146 | 244.1.1.33 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › PF30157 | 0.55 | 47.0 | 4.25e-01 | 93.4% | 84.0% |
| 4062713 | 304.48.1.92 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › PF30234 | 0.55 | 42.0 | 3.87e-01 | 84.6% | 86.4% |
| 4333414 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.55 | 39.0 | 3.93e-01 | 75.8% | 86.2% |
| 3293018 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.54 | 39.0 | 3.91e-01 | 75.8% | 85.3% |
| 3987406 | 3115.6.1.1 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY | 0.54 | 40.0 | 4.32e-01 | 87.9% | 96.0% |
| 3953369 | 304.4.1.2 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › MIase | 0.53 | 41.0 | 3.84e-01 | 80.2% | 88.1% |
| 3247382 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.53 | 36.0 | 3.68e-01 | 70.3% | 87.8% |
| 3686997 | 304.9.1.6 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 | 0.53 | 38.0 | 4.26e-01 | 80.2% | 100.0% |
| 3737300 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.52 | 42.0 | 2.85e-01 | 91.2% | 93.9% |
| 3803779 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.51 | 36.0 | 3.90e-01 | 72.5% | 97.3% |
| 4332626 | 3532.1.1.0 ↗ | alpha arrays › RNA-binding domain of telomerase › RNA-binding domain of telomerase › RNA-binding domain of telomerase | 0.51 | 41.0 | 2.51e-01 | 86.8% | 17.3% |