←Back to structures
SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00693
Bact-VirSR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00693
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 26-119_152-163_198-242
Domain cluster:
rep: ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00018__D284-399_465-514
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2e26A01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.63 | 57.0 | 5.06e-01 | 96.0% | 94.3% |
| 2zewB00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.62 | 51.0 | 5.19e-01 | 86.1% | 95.9% |
| 7t7zA01 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.62 | 49.0 | 5.02e-01 | 84.1% | 99.3% |
| 4gwmA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 51.0 | 5.03e-01 | 90.1% | 98.8% |
| 3k4zA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.60 | 49.0 | 4.78e-01 | 85.4% | 96.9% |
| 1gwmA00 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.60 | 53.0 | 5.30e-01 | 97.4% | 92.8% |
| 2q1fA01 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.60 | 51.0 | 4.94e-01 | 90.7% | 93.4% |
| 4xuoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.59 | 49.0 | 4.84e-01 | 86.8% | 94.2% |
| 1umhA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.59 | 48.0 | 4.52e-01 | 86.1% | 92.9% |
| 1wcuA00 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.59 | 52.0 | 5.25e-01 | 94.0% | 97.3% |
| 1dyoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 50.0 | 4.95e-01 | 92.1% | 96.8% |
| 2c4xA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 46.0 | 4.61e-01 | 84.8% | 98.7% |
| 1od3A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.57 | 46.0 | 4.88e-01 | 86.1% | 96.2% |
| 2bbaA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.57 | 46.0 | 4.36e-01 | 86.8% | 95.7% |
| 4qawH03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.57 | 46.0 | 4.83e-01 | 86.8% | 96.3% |
| 1pmhX00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 46.0 | 4.36e-01 | 88.1% | 98.4% |
| 4indA01 | 2.60.120.1320 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 47.0 | 4.81e-01 | 89.4% | 92.5% |
| 7mjrA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 45.0 | 4.85e-01 | 85.4% | 99.2% |
| 1gnyA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 46.0 | 4.60e-01 | 86.8% | 97.4% |
| 7vt4A01 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.53 | 41.0 | 4.40e-01 | 88.7% | 96.1% |
| 1k12A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 43.0 | 4.31e-01 | 87.4% | 93.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5027960 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.82 | 74.0 | 6.58e-01 | 94.0% | 99.0% |
| 4941997 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.82 | 74.0 | 6.32e-01 | 94.0% | 95.6% |
| 5061926 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.82 | 75.0 | 6.39e-01 | 95.4% | 98.7% |
| 5060667 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.82 | 73.0 | 6.37e-01 | 93.4% | 100.0% |
| 4981038 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.81 | 74.0 | 6.40e-01 | 96.0% | 95.0% |
| 4993279 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.80 | 74.0 | 6.45e-01 | 96.7% | 98.6% |
| 3944601 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.73 | 68.0 | 6.00e-01 | 98.7% | 96.2% |
| 4030689 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.65 | 61.0 | 5.62e-01 | 98.0% | 96.8% |
| 5032597 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.63 | 53.0 | 5.00e-01 | 87.4% | 97.7% |
| 2420857 | 10.1.1.55 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PL28 | 0.63 | 48.0 | 4.04e-01 | 80.8% | 90.8% |
| 4937337 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.60 | 42.0 | 4.56e-01 | 70.9% | 100.0% |
| 5081459 | 10.1.2.181 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › CBM_4_9 | 0.60 | 49.0 | 4.84e-01 | 86.8% | 98.1% |
| 5032632 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.59 | 48.0 | 4.44e-01 | 86.1% | 94.9% |
| 3293359 | 10.32.1.33 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CIA30 | 0.59 | 49.0 | 4.40e-01 | 87.4% | 94.6% |
| 5014960 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.59 | 49.0 | 4.65e-01 | 87.4% | 90.9% |
| 1209559 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.58 | 47.0 | 4.67e-01 | 84.8% | 98.1% |
| 3582968 | 10.32.1.20 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › FBA | 0.58 | 48.0 | 4.56e-01 | 87.4% | 96.1% |
| 3948941 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.58 | 48.0 | 4.83e-01 | 88.1% | 94.2% |
| 3245055 | 10.32.1.20 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › FBA | 0.56 | 46.0 | 3.96e-01 | 87.4% | 82.5% |
| 1867076 | 10.1.1.18 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Sialidase | 0.56 | 53.0 | 4.88e-01 | 100.0% | 98.4% |
| 3949369 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.56 | 46.0 | 4.30e-01 | 88.1% | 88.6% |
| 3458331 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.56 | 44.0 | 3.73e-01 | 85.4% | 92.7% |
| 3722942 | 10.32.1.28 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Sad1_UNC | 0.52 | 43.0 | 4.16e-01 | 86.1% | 85.5% |
| 3524239 | 10.32.1.69 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › LAMININ_IV_B | 0.50 | 44.0 | 3.95e-01 | 98.0% | 90.9% |
D2
medium
residues 120-151_164-197
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pz7A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.82 | 75.0 | 5.32e-01 | 100.0% | 45.2% |
| 2r16A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.79 | 72.0 | 5.22e-01 | 100.0% | 47.4% |
| 1mdaH00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 46.0 | 2.92e-01 | 81.8% | 30.7% |
| 1r7lA00 | 3.30.2120.10 | Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like | 0.59 | 38.0 | 3.27e-01 | 72.7% | 41.7% |
| 3d89A00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.59 | 43.0 | 3.39e-01 | 77.3% | 50.7% |
| 3nvqA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 42.0 | 2.61e-01 | 83.3% | 33.8% |
| 1v73A00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.55 | 40.0 | 2.62e-01 | 78.8% | 39.6% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 38.0 | 3.29e-01 | 74.2% | 49.5% |
| 3igfA02 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 36.0 | 3.54e-01 | 71.2% | 98.6% |
| 6i8xA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 46.0 | 3.57e-01 | 98.5% | 89.3% |
| 7ct3A01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.53 | 40.0 | 3.29e-01 | 80.3% | 50.4% |
| 3c5xC00 | 2.60.260.50 | Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Flavivirus polyprotein propeptide domain | 0.51 | 34.0 | 3.26e-01 | 83.3% | 56.8% |
| 2izvA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 43.0 | 3.34e-01 | 100.0% | 61.3% |
| 6hbzA01 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.51 | 36.0 | 3.12e-01 | 75.8% | 61.2% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4081039 | 66.1.1.0 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain | 0.66 | 38.0 | 3.72e-01 | 74.2% | 52.9% |
| 3595178 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.61 | 46.0 | 2.64e-01 | 81.8% | 13.8% |
| 3884574 | 66.1.1.3 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Sol_Rieske_ferrdox | 0.61 | 44.0 | 3.42e-01 | 77.3% | 48.3% |
| 5826 | 330.5.1.2 ↗ | a+b two layers › dsRBD-like › Bacillus phage protein › Bacillus phage protein › Phage_ABA_S | 0.59 | 38.0 | 3.27e-01 | 72.7% | 41.7% |
| 3995797 | 220.1.1.160 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD | 0.57 | 35.0 | 3.56e-01 | 74.2% | 60.0% |
| 3221927 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.54 | 45.0 | 2.95e-01 | 92.4% | 41.0% |
| 3692631 | 319.1.1.14 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HECT_2 | 0.54 | 39.0 | 3.29e-01 | 75.8% | 60.0% |
| 3967702 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.54 | 38.0 | 3.18e-01 | 77.3% | 74.4% |
| 4025727 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.53 | 37.0 | 2.92e-01 | 72.7% | 87.9% |
| 3512463 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.53 | 45.0 | 3.73e-01 | 97.0% | 84.2% |
| 4947901 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.53 | 38.0 | 3.44e-01 | 77.3% | 71.0% |
| 3261111 | 63.1.1.0 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain | 0.52 | 38.0 | 3.04e-01 | 80.3% | 41.4% |
| 3593972 | 12.6.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related | 0.52 | 36.0 | 3.74e-01 | 72.7% | 93.3% |
| 4982339 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 41.0 | 2.71e-01 | 90.9% | 85.7% |
| 3931011 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.51 | 44.0 | 3.60e-01 | 100.0% | 91.5% |
| 3576148 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 36.0 | 2.94e-01 | 77.3% | 57.8% |
| 3998279 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.50 | 41.0 | 3.48e-01 | 90.9% | 80.9% |