←Back to structures
SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00039
Bact-VirSR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00039
Identity
- Kingdom:
- phage
Quality
84.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-114
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lydA01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.64 | 45.0 | 4.06e-01 | 79.8% | 52.8% |
| 2imjD01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 44.0 | 4.02e-01 | 99.0% | 52.8% |
| 4h5bA00 | 3.30.1460.70 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.62 | 48.0 | 4.19e-01 | 80.8% | 96.7% |
| 2n8xA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.62 | 44.0 | 3.75e-01 | 73.1% | 63.3% |
| 3bf2A00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.59 | 41.0 | 3.90e-01 | 72.1% | 83.2% |
| 3q9oA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 52.0 | 4.15e-01 | 99.0% | 82.9% |
| 1v3eA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.59 | 53.0 | 3.53e-01 | 100.0% | 86.8% |
| 3pg6B00 | 3.30.390.130 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.58 | 40.0 | 3.70e-01 | 71.2% | 59.7% |
| 2c4iA01 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.58 | 47.0 | 4.60e-01 | 91.3% | 98.3% |
| 1tk1A00 | 3.40.1500.10 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic | 0.57 | 43.0 | 3.43e-01 | 81.7% | 54.8% |
| 1swgC00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.56 | 41.0 | 3.93e-01 | 77.9% | 84.9% |
| 1y5oA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 37.0 | 3.62e-01 | 71.2% | 60.9% |
| 6z9cA01 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.55 | 45.0 | 4.32e-01 | 89.4% | 100.0% |
| 3njtA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.55 | 45.0 | 3.18e-01 | 86.5% | 90.5% |
| 4ufcA01 | 2.70.98.50 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans | 0.54 | 47.0 | 3.35e-01 | 99.0% | 97.6% |
| 1aq3A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.53 | 39.0 | 3.71e-01 | 77.9% | 93.8% |
| 4xl1E01 | 2.60.40.3510 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 44.0 | 3.90e-01 | 94.2% | 96.8% |
| 6r3wA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 44.0 | 3.86e-01 | 96.2% | 92.5% |
| 3fidA00 | 2.40.128.140 | Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein | 0.51 | 47.0 | 3.35e-01 | 100.0% | 87.5% |
| 2joeA01 | 3.30.1830.10 | Alpha Beta › 2-Layer Sandwich › YehR-like fold › YehR-like | 0.51 | 46.0 | 4.30e-01 | 99.0% | 100.0% |
| 3o0lA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 34.0 | 3.40e-01 | 79.8% | 65.1% |
| 3p2nB02 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 44.0 | 3.19e-01 | 100.0% | 90.1% |
| 1rypC00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.50 | 44.0 | 3.41e-01 | 99.0% | 77.0% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3424115 | 5.1.3.54 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1668 | 0.66 | 49.0 | 3.35e-01 | 78.8% | 22.0% |
| 3482862 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.65 | 59.0 | 4.50e-01 | 100.0% | 54.6% |
| 4985492 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.65 | 51.0 | 3.75e-01 | 83.7% | 80.0% |
| 3478818 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.65 | 44.0 | 2.92e-01 | 79.8% | 17.3% |
| 3802164 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.64 | 45.0 | 3.19e-01 | 79.8% | 23.2% |
| 3702318 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.64 | 49.0 | 3.72e-01 | 79.8% | 82.2% |
| 3495172 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.61 | 45.0 | 3.85e-01 | 80.8% | 48.5% |
| 3654114 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.60 | 50.0 | 3.94e-01 | 89.4% | 91.0% |
| 3490071 | 71.2.1.4 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N | 0.59 | 47.0 | 3.64e-01 | 85.6% | 93.6% |
| 3173251 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.59 | 44.0 | 3.75e-01 | 78.8% | 60.0% |
| 5065294 | 4051.1.1.0 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz | 0.58 | 45.0 | 3.89e-01 | 83.7% | 69.4% |
| 3703955 | 1100.1.1.1 ↗ | beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 | 0.58 | 41.0 | 3.11e-01 | 74.0% | 51.5% |
| 3761115 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 46.0 | 3.01e-01 | 83.7% | 34.9% |
| 3169657 | 4099.1.1.47 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30282 | 0.58 | 43.0 | 4.21e-01 | 78.8% | 76.5% |
| 3499097 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.57 | 42.0 | 3.79e-01 | 77.9% | 90.3% |
| 3963449 | 12.3.1.8 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N | 0.56 | 42.0 | 3.07e-01 | 78.8% | 33.2% |
| 4025469 | 868.1.1.0 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related | 0.56 | 50.0 | 3.95e-01 | 100.0% | 60.9% |
| 4823574 | 4030.1.1.1 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › F_actin_cap_B | 0.55 | 41.0 | 3.60e-01 | 78.8% | 85.3% |
| 3850089 | 241.15.1.5 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › RM5_Med14 | 0.55 | 39.0 | 3.80e-01 | 74.0% | 100.0% |
| 3373981 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.54 | 43.0 | 3.47e-01 | 87.5% | 54.5% |
| 3535271 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 44.0 | 4.03e-01 | 87.5% | 91.9% |
| 3907123 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.54 | 40.0 | 3.33e-01 | 77.9% | 60.5% |
| 4888072 | 327.16.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin | 0.52 | 37.0 | 2.93e-01 | 73.1% | 68.3% |
| 3911678 | 11.2.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › MNNL | 0.52 | 42.0 | 3.71e-01 | 89.4% | 98.1% |
| 5079397 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.52 | 34.0 | 3.68e-01 | 70.2% | 81.2% |
| 3544627 | 389.1.3.35 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TSP1_spondin | 0.51 | 29.0 | 3.57e-01 | 79.8% | 95.0% |
| 3249225 | 223.2.1.6 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN | 0.51 | 39.0 | 3.36e-01 | 79.8% | 57.5% |
| 4956759 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 39.0 | 3.40e-01 | 80.8% | 80.6% |
| 3177363 | 11.1.5.134 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PF29914 | 0.51 | 39.0 | 3.52e-01 | 83.7% | 98.0% |