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SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00074
Bact-VirSR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00074
Identity
- Kingdom:
- phage
Quality
76.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-57
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5ixcA01 | 3.40.1090.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain | 0.68 | 50.0 | 2.95e-01 | 78.9% | 48.4% |
| 4czxA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.63 | 45.0 | 2.85e-01 | 77.2% | 39.2% |
| 3dxqA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 40.0 | 3.57e-01 | 70.2% | 81.9% |
| 5f7uA02 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.59 | 41.0 | 2.75e-01 | 73.7% | 63.3% |
| 3oymA01 | 1.10.340.70 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.58 | 40.0 | 3.54e-01 | 75.4% | 94.6% |
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.55 | 38.0 | 3.19e-01 | 73.7% | 100.0% |
| 2hzmA02 | 2.20.140.20 | Mainly Beta › Single Sheet › q64v53_bacfr protein fold › | 0.54 | 38.0 | 3.36e-01 | 73.7% | 65.9% |
| 6lf2B01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.54 | 37.0 | 2.95e-01 | 73.7% | 47.6% |
| 2m3xC02 | 2.40.10.360 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.53 | 39.0 | 3.76e-01 | 82.5% | 87.0% |
| 1f49A05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 40.0 | 2.61e-01 | 86.0% | 65.2% |
| 3ifvC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.52 | 36.0 | 2.48e-01 | 75.4% | 36.7% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.52 | 38.0 | 3.23e-01 | 78.9% | 55.6% |
| 6qp9B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 41.0 | 2.52e-01 | 98.2% | 74.0% |
| 1hdhA02 | 3.30.1120.10 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.51 | 34.0 | 3.16e-01 | 70.2% | 58.4% |
| 4trtA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.51 | 36.0 | 3.00e-01 | 78.9% | 100.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5008200 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.76 | 51.0 | 4.80e-01 | 70.2% | 78.6% |
| 4012787 | 3454.1.1.0 ↗ | beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like | 0.65 | 39.0 | 3.86e-01 | 71.9% | 56.7% |
| 4984519 | 243.6.1.1 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 | 0.63 | 46.0 | 4.36e-01 | 78.9% | 84.3% |
| 3687323 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.62 | 39.0 | 3.78e-01 | 70.2% | 55.4% |
| 3961571 | 3699.1.1.3 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synth | 0.60 | 46.0 | 3.68e-01 | 84.2% | 68.3% |
| 1063837 | 12.3.1.19 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 | 0.58 | 40.0 | 2.73e-01 | 73.7% | 63.0% |
| 146734 | 881.3.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Outer membrane-associated lipoprotein TP0453 › Outer membrane-associated lipoprotein TP0453 › TP0453 | 0.58 | 41.0 | 2.70e-01 | 71.9% | 34.3% |
| 3726585 | 7512.1.1.58 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › HET | 0.58 | 42.0 | 2.94e-01 | 78.9% | 91.2% |
| 3305034 | 7512.1.1.6 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 | 0.58 | 43.0 | 3.12e-01 | 84.2% | 48.3% |
| 2630838 | 12.3.1.19 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 | 0.57 | 41.0 | 2.82e-01 | 78.9% | 29.7% |
| 3684907 | 4.1.1.235 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW1_SPT5 | 0.56 | 45.0 | 3.39e-01 | 87.7% | 59.3% |
| 3569639 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.54 | 38.0 | 3.49e-01 | 75.4% | 77.5% |
| 3590950 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.54 | 40.0 | 3.09e-01 | 86.0% | 51.6% |
| 3731743 | 2007.1.1.32 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › HET | 0.53 | 36.0 | 2.54e-01 | 70.2% | 87.5% |
| 5054848 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.51 | 37.0 | 3.14e-01 | 75.4% | 66.0% |
| 4980224 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.51 | 37.0 | 2.95e-01 | 80.7% | 92.0% |
| 3924841 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.50 | 37.0 | 2.56e-01 | 86.0% | 62.9% |