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SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00077
Bact-VirSR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00077
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-77
Domain cluster:
rep: DGJ7_scaffold_2_2069_prodigal-single.1__X__X__00027__D3-82
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5iu1B00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 35.0 | 3.15e-01 | 85.5% | 44.6% |
| 4hstB02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.53 | 29.0 | 3.04e-01 | 71.1% | 55.9% |
| 3m4rA01 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.52 | 40.0 | 3.12e-01 | 89.5% | 79.6% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3786904 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.56 | 40.0 | 2.58e-01 | 76.3% | 83.0% |
| 3700334 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.56 | 48.0 | 3.71e-01 | 96.1% | 93.7% |
| 3442564 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.54 | 30.0 | 3.47e-01 | 76.3% | 76.4% |
| 3521904 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 42.0 | 3.93e-01 | 100.0% | 69.5% |
| 3490245 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 39.0 | 3.80e-01 | 98.7% | 71.1% |
| 5079397 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.52 | 38.0 | 3.74e-01 | 78.9% | 85.9% |
| 4582665 | 140.1.1.6 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1,tRNA-synt_1g | 0.52 | 41.0 | 2.86e-01 | 88.2% | 49.5% |
| 4967405 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 39.0 | 3.54e-01 | 81.6% | 97.1% |
| 5067631 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.51 | 37.0 | 3.36e-01 | 77.6% | 90.0% |
| 1954225 | 3174.4.1.1 ↗ | beta barrels › Ribosomal protein L14-like › Hypothetical protein NegoA.19184.a N-terminal domain › Hypothetical protein NegoA.19184.a N-terminal domain › DUF4265 | 0.51 | 38.0 | 3.98e-01 | 100.0% | 91.0% |
D2
medium
residues 88-141
Domain cluster:
representative