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SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00084

Bact-Vir

SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00084

Identity

Kingdom:
phage

Quality

70.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-56
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e19A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 43.0 4.47e-01 98.1% 74.5%
1uhsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 40.0 4.02e-01 92.3% 63.0%
4q6lA00 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.60 38.0 2.86e-01 78.8% 24.4%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.58 36.0 3.73e-01 98.1% 66.7%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.51 40.0 3.68e-01 98.1% 64.8%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3571045 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.70 46.0 4.93e-01 98.1% 81.4%
5054023 314.1.1.1 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 0.55 44.0 2.77e-01 92.3% 83.5%
3507782 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 37.0 3.82e-01 100.0% 72.0%
4491672 601.7.1.6 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › GlnD_UR_UTase 0.50 39.0 2.99e-01 100.0% 75.0%