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SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00097
Bact-VirSR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00097
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-75
Domain cluster:
rep: SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00086__D6-65
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4qucA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.66 | 46.0 | 4.93e-01 | 72.1% | 94.6% |
| 2coaA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.64 | 44.0 | 3.68e-01 | 72.1% | 82.2% |
| 1x1fA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 44.0 | 3.47e-01 | 73.5% | 71.1% |
| 4pmwA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 55.0 | 4.97e-01 | 97.1% | 95.6% |
| 1j0wB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 43.0 | 3.80e-01 | 72.1% | 76.7% |
| 2cayB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 41.0 | 3.44e-01 | 70.6% | 67.9% |
| 1eazA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 42.0 | 3.74e-01 | 72.1% | 82.5% |
| 3au4A04 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 42.0 | 3.85e-01 | 72.1% | 77.4% |
| 1h4rA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 42.0 | 3.86e-01 | 72.1% | 85.7% |
| 3tssA02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 52.0 | 5.21e-01 | 98.5% | 91.5% |
| 2eqsA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 53.0 | 4.84e-01 | 98.5% | 75.3% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 45.0 | 4.49e-01 | 82.4% | 77.8% |
| 2rhiA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 47.0 | 3.92e-01 | 86.8% | 59.8% |
| 4xmqA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 40.0 | 3.29e-01 | 75.0% | 62.4% |
| 2xanA01 | 3.30.200.110 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Inositol-pentakisphosphate 2-kinase, N-lobe | 0.57 | 51.0 | 4.00e-01 | 100.0% | 89.5% |
| 3ulbA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 42.0 | 3.99e-01 | 85.3% | 65.1% |
| 1rwzA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.56 | 48.0 | 3.37e-01 | 100.0% | 93.4% |
| 1sxjH01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.56 | 43.0 | 3.58e-01 | 85.3% | 56.5% |
| 4ckbA01 | 3.30.470.140 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › | 0.55 | 42.0 | 3.12e-01 | 82.4% | 43.3% |
| 1ud9A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.55 | 48.0 | 3.33e-01 | 100.0% | 93.8% |
| 3s8zA02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.55 | 40.0 | 2.68e-01 | 80.9% | 82.0% |
| 1kopA00 | 3.10.200.10 | Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase | 0.55 | 44.0 | 3.23e-01 | 95.6% | 61.0% |
| 2yf0A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 43.0 | 3.95e-01 | 89.7% | 66.7% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.54 | 42.0 | 3.12e-01 | 86.8% | 34.7% |
| 2dn8A01 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.54 | 42.0 | 4.13e-01 | 85.3% | 79.2% |
| 2qj8A00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.53 | 41.0 | 2.67e-01 | 83.8% | 18.8% |
| 4trtA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 41.0 | 3.48e-01 | 86.8% | 60.8% |
| 3t8qB01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 37.0 | 3.20e-01 | 75.0% | 95.7% |
| 4rkiA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.52 | 40.0 | 3.34e-01 | 86.8% | 52.3% |
| 3dfjA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 37.0 | 3.19e-01 | 76.5% | 71.7% |
| 1zsqA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 42.0 | 3.72e-01 | 89.7% | 66.3% |
| 3d6wB01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 38.0 | 3.82e-01 | 83.8% | 98.6% |
| 3clqA04 | 3.90.1700.10 | Alpha Beta › Alpha-Beta Complex › v583 fold › v583 domain like | 0.51 | 41.0 | 3.19e-01 | 92.6% | 95.8% |
| 4gqzA00 | 2.60.40.3700 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 38.0 | 2.92e-01 | 79.4% | 46.2% |
| 6ptrB01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.51 | 39.0 | 3.42e-01 | 86.8% | 63.7% |
| 1vpkA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.51 | 39.0 | 3.34e-01 | 86.8% | 60.8% |
| 6ap4B02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.50 | 40.0 | 3.27e-01 | 91.2% | 56.0% |
ECOD (65)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4033493 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.74 | 41.0 | 4.50e-01 | 76.5% | 67.3% |
| 5044748 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.66 | 48.0 | 4.27e-01 | 79.4% | 90.5% |
| 3495986 | 220.1.1.26 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II | 0.66 | 45.0 | 3.50e-01 | 70.6% | 70.7% |
| 3908519 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.64 | 44.0 | 3.65e-01 | 72.1% | 67.2% |
| 3556320 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 49.0 | 3.79e-01 | 83.8% | 62.1% |
| 3908892 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.62 | 43.0 | 3.47e-01 | 72.1% | 83.0% |
| 4996362 | 220.1.1.87 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 | 0.62 | 44.0 | 3.78e-01 | 85.3% | 47.2% |
| 3570843 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.61 | 41.0 | 3.61e-01 | 72.1% | 70.0% |
| 3250427 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.60 | 41.0 | 3.60e-01 | 72.1% | 76.4% |
| 3902810 | 220.1.1.58 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like | 0.60 | 40.0 | 3.42e-01 | 70.6% | 70.4% |
| 3264236 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.60 | 45.0 | 3.92e-01 | 88.2% | 54.0% |
| 165768 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.60 | 53.0 | 4.71e-01 | 98.5% | 69.8% |
| 3725687 | 220.1.1.26 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II | 0.59 | 40.0 | 3.31e-01 | 70.6% | 60.8% |
| 3697109 | 880.1.1.1 ↗ | a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind | 0.59 | 43.0 | 2.65e-01 | 82.4% | 30.4% |
| 3572708 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.59 | 40.0 | 3.45e-01 | 72.1% | 66.1% |
| 3399262 | 62.1.1.1 ↗ | beta meanders › Carbonic anhydrase › Carbonic anhydrase › Carbonic anhydrase › Carb_anhydrase | 0.58 | 48.0 | 3.43e-01 | 94.1% | 70.7% |
| 4610858 | 220.1.1.44 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N | 0.58 | 40.0 | 3.57e-01 | 73.5% | 96.2% |
| 3998942 | 220.1.1.162 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF31014 | 0.58 | 50.0 | 4.05e-01 | 97.1% | 51.5% |
| 4934001 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.57 | 44.0 | 3.65e-01 | 85.3% | 56.0% |
| 3407758 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.57 | 44.0 | 3.71e-01 | 89.7% | 49.6% |
| 162047 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.57 | 44.0 | 3.67e-01 | 86.8% | 61.4% |
| 3956931 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 45.0 | 3.80e-01 | 85.3% | 70.0% |
| 4028996 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 39.0 | 3.15e-01 | 73.5% | 59.3% |
| 5049640 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 42.0 | 4.03e-01 | 92.6% | 68.4% |
| 3263647 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 45.0 | 3.72e-01 | 89.7% | 49.2% |
| 4026069 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.56 | 43.0 | 3.53e-01 | 86.8% | 53.3% |
| 4537687 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.56 | 42.0 | 4.33e-01 | 88.2% | 87.7% |
| 4315973 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.55 | 42.0 | 3.56e-01 | 85.3% | 60.8% |
| 3601659 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 45.0 | 3.47e-01 | 89.7% | 41.3% |
| 4660283 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.55 | 42.0 | 3.54e-01 | 86.8% | 62.4% |
| 3592181 | 220.1.1.74 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H | 0.55 | 43.0 | 3.44e-01 | 85.3% | 45.2% |
| 5033948 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.54 | 43.0 | 3.53e-01 | 88.2% | 58.5% |
| 3249490 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.54 | 44.0 | 3.69e-01 | 89.7% | 52.2% |
| 3259128 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.54 | 45.0 | 3.64e-01 | 89.7% | 48.8% |
| 3266298 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.54 | 44.0 | 3.55e-01 | 89.7% | 50.7% |
| 3412900 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.54 | 37.0 | 3.17e-01 | 72.1% | 83.5% |
| 3176453 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.54 | 45.0 | 3.50e-01 | 89.7% | 45.0% |
| 3899369 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.54 | 44.0 | 3.42e-01 | 89.7% | 40.7% |
| 3917637 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.53 | 44.0 | 3.41e-01 | 89.7% | 44.7% |
| 4186865 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.53 | 44.0 | 2.89e-01 | 89.7% | 21.8% |
| 4934002 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.53 | 41.0 | 3.43e-01 | 86.8% | 61.5% |
| 3785371 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.53 | 44.0 | 3.49e-01 | 89.7% | 54.8% |
| 3531579 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.53 | 44.0 | 3.36e-01 | 89.7% | 39.4% |
| 5056780 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 44.0 | 3.61e-01 | 91.2% | 52.0% |
| 3259098 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.53 | 44.0 | 3.63e-01 | 89.7% | 53.3% |
| 3387895 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 41.0 | 3.17e-01 | 86.8% | 36.3% |
| 4121439 | 220.1.1.217 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH, GRAM | 0.53 | 44.0 | 2.71e-01 | 89.7% | 16.6% |
| 5037345 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.53 | 41.0 | 3.38e-01 | 86.8% | 63.9% |
| 4202484 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.53 | 43.0 | 3.24e-01 | 89.7% | 36.5% |
| 5991 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.53 | 41.0 | 3.44e-01 | 86.8% | 60.7% |
| 3675857 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.52 | 44.0 | 3.21e-01 | 100.0% | 34.1% |
| 5078629 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 43.0 | 3.64e-01 | 88.2% | 66.1% |
| 3910960 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.52 | 43.0 | 3.53e-01 | 89.7% | 55.0% |
| 4140296 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.52 | 43.0 | 3.37e-01 | 89.7% | 45.0% |
| 2635197 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.52 | 41.0 | 4.07e-01 | 88.2% | 82.4% |
| 3810543 | 220.1.1.20 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH | 0.52 | 42.0 | 3.63e-01 | 89.7% | 60.0% |
| 4124004 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.52 | 41.0 | 4.24e-01 | 91.2% | 98.5% |
| 144176 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.52 | 41.0 | 3.45e-01 | 89.7% | 63.7% |
| 3574358 | 220.1.1.18 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PTB | 0.51 | 41.0 | 3.57e-01 | 88.2% | 74.3% |
| 3559120 | 220.1.1.173 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERK | 0.51 | 41.0 | 3.44e-01 | 88.2% | 69.2% |
| 3190430 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 42.0 | 3.16e-01 | 94.1% | 39.5% |
| 4418258 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.51 | 39.0 | 3.78e-01 | 86.8% | 75.0% |
| 3489971 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 41.0 | 3.49e-01 | 92.6% | 56.7% |
| 3986779 | 218.5.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Uncharacterized protein › Uncharacterized protein › DUF1116 | 0.50 | 41.0 | 3.19e-01 | 95.6% | 94.2% |
| 3171728 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.50 | 42.0 | 3.34e-01 | 94.1% | 55.2% |