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SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00123
Bact-VirSR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00123
Identity
- Kingdom:
- phage
Quality
61.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-63
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jswB03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.89 | 74.0 | 7.63e-01 | 94.4% | 96.0% |
| 3rd8A03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.80 | 67.0 | 6.73e-01 | 96.3% | 92.6% |
| 1iuqA01 | 1.10.1200.50 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Glycerol-3-phosphate acyltransferase, alpha helical bundle, N-terminal | 0.78 | 60.0 | 5.32e-01 | 83.3% | 81.6% |
| 1vq8P03 | 1.10.1200.60 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.73 | 54.0 | 5.37e-01 | 79.6% | 80.0% |
| 2y1eA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.71 | 52.0 | 4.51e-01 | 79.6% | 71.3% |
| 4uz0A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.71 | 61.0 | 5.31e-01 | 100.0% | 64.4% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.70 | 51.0 | 4.49e-01 | 79.6% | 70.6% |
| 4irlB02 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.69 | 57.0 | 4.85e-01 | 100.0% | 55.9% |
| 1lp1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.68 | 53.0 | 5.27e-01 | 88.9% | 81.8% |
| 3f4sA02 | 1.10.40.80 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › | 0.68 | 58.0 | 5.56e-01 | 100.0% | 95.3% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.65 | 49.0 | 4.97e-01 | 88.9% | 81.8% |
| 3d1uA03 | 1.20.1270.240 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.62 | 54.0 | 4.37e-01 | 96.3% | 58.4% |
| 2yi9A05 | 1.20.1270.270 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › VP1, C-terminal extension domain | 0.61 | 48.0 | 4.32e-01 | 88.9% | 64.9% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.60 | 49.0 | 4.68e-01 | 100.0% | 80.6% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 43.0 | 4.21e-01 | 81.5% | 93.1% |
| 1c20A00 | 1.10.150.60 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › ARID DNA-binding domain | 0.54 | 39.0 | 3.18e-01 | 85.2% | 45.3% |
| 4zkdA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 42.0 | 2.86e-01 | 94.4% | 75.9% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4377543 | 1112.1.1.0 ↗ | alpha arrays › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain | 0.92 | 84.0 | 8.10e-01 | 100.0% | 88.3% |
| 181629 | 4953.1.1.3 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › FumaraseC_C | 0.91 | 80.0 | 7.02e-01 | 100.0% | 66.2% |
| 4581259 | 1112.1.1.0 ↗ | alpha arrays › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain | 0.89 | 79.0 | 7.67e-01 | 98.1% | 90.0% |
| 4500127 | 1112.1.1.0 ↗ | alpha arrays › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain | 0.88 | 79.0 | 7.86e-01 | 98.1% | 96.4% |
| 3971803 | 1112.1.1.0 ↗ | alpha arrays › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain | 0.87 | 76.0 | 7.32e-01 | 98.1% | 86.7% |
| 5045836 | 4953.1.1.3 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › FumaraseC_C | 0.87 | 75.0 | 7.02e-01 | 100.0% | 78.5% |
| 4188257 | 602.1.1.0 ↗ | alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like | 0.85 | 72.0 | 4.35e-01 | 100.0% | 15.7% |
| 4004635 | 1112.1.1.0 ↗ | alpha arrays › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain | 0.84 | 72.0 | 7.18e-01 | 98.1% | 94.5% |
| 4004634 | 1112.1.1.0 ↗ | alpha arrays › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain | 0.83 | 74.0 | 7.15e-01 | 100.0% | 91.7% |
| 4976060 | 4953.1.1.3 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › FumaraseC_C | 0.81 | 69.0 | 6.18e-01 | 100.0% | 68.0% |
| 2771394 | 1112.1.1.0 ↗ | alpha arrays › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain | 0.79 | 67.0 | 6.52e-01 | 98.1% | 86.7% |
| 5038442 | 3050.1.1.7 ↗ | alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal_L19e_C | 0.79 | 69.0 | 5.57e-01 | 100.0% | 55.2% |
| 4462943 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.73 | 50.0 | 4.25e-01 | 72.2% | 65.6% |
| 3781867 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 53.0 | 5.51e-01 | 81.5% | 84.0% |
| 396389 | 632.2.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › B | 0.73 | 53.0 | 5.38e-01 | 88.9% | 79.2% |
| 3892513 | 110.1.1.2 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD | 0.70 | 61.0 | 5.10e-01 | 100.0% | 57.9% |
| 3522440 | 3443.1.1.5 ↗ | alpha duplicates or obligate multimers › Get5 carboxyl domain › Get5 carboxyl domain › Get5 carboxyl domain › TTC3_9th | 0.69 | 50.0 | 4.81e-01 | 75.9% | 86.7% |
| 5055046 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.68 | 54.0 | 5.28e-01 | 88.9% | 78.3% |
| 3736557 | 3718.1.1.0 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT | 0.65 | 47.0 | 4.23e-01 | 79.6% | 76.2% |
| 3383540 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.65 | 54.0 | 3.48e-01 | 100.0% | 18.9% |
| 3454432 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.65 | 53.0 | 3.48e-01 | 100.0% | 19.6% |
| 4965996 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.64 | 47.0 | 4.73e-01 | 81.5% | 81.8% |
| 3951854 | 103.12.1.1 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR | 0.62 | 45.0 | 4.33e-01 | 75.9% | 83.3% |
| 3800383 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 45.0 | 4.31e-01 | 87.0% | 72.3% |
| 4097350 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.56 | 42.0 | 4.04e-01 | 85.2% | 90.8% |
| 3283911 | 564.1.1.2 ↗ | alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › zf-HC2 | 0.55 | 37.0 | 3.90e-01 | 96.3% | 78.0% |
| 1563515 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.53 | 45.0 | 3.03e-01 | 100.0% | 40.1% |