Back to structures

SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00144

Bact-Vir

SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00144

Identity

Kingdom:
phage

Quality

93.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-91
PDB
D2 high residues 97-172
PDB
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dclA02 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.74 67.0 6.30e-01 100.0% 90.1%
2lp6A00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.72 65.0 6.12e-01 100.0% 93.4%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.70 59.0 6.02e-01 100.0% 96.0%
4he6A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.70 65.0 6.11e-01 100.0% 91.0%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.68 60.0 6.01e-01 100.0% 96.2%
5ylyA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.66 58.0 5.14e-01 100.0% 89.3%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 57.0 5.20e-01 100.0% 92.3%
1qfjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 57.0 5.46e-01 100.0% 93.4%
1vq8T00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 46.0 3.99e-01 75.0% 69.7%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 56.0 5.60e-01 100.0% 98.7%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.64 51.0 4.60e-01 88.2% 73.4%
3t05A02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.64 56.0 5.23e-01 100.0% 95.9%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 55.0 5.18e-01 100.0% 93.8%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 4.50e-01 72.4% 77.5%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 45.0 4.89e-01 77.6% 98.4%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 4.61e-01 72.4% 88.9%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 54.0 4.89e-01 100.0% 96.2%
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 53.0 5.15e-01 100.0% 94.1%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 52.0 4.76e-01 100.0% 88.7%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 3.63e-01 72.4% 63.2%
2zxqA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 43.0 3.36e-01 98.7% 36.4%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 40.0 3.41e-01 76.3% 45.7%
1ifrA00 2.60.40.1260 Mainly Beta › Sandwich › Immunoglobulin-like › Lamin Tail domain 0.55 47.0 4.22e-01 100.0% 86.7%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 47.0 4.55e-01 97.4% 98.9%
3wdhA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 32.0 3.20e-01 100.0% 52.4%
2l0dA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 4.12e-01 98.7% 74.6%
3zjaA01 2.60.40.1890 Mainly Beta › Sandwich › Immunoglobulin-like › PCu(A)C copper chaperone 0.54 46.0 4.19e-01 98.7% 85.8%
1eerC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 4.13e-01 98.7% 81.4%
4j3vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.60e-01 97.4% 60.0%
4b97A00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.52 44.0 3.63e-01 100.0% 92.7%
3m7aA01 2.60.120.1140 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 0.52 39.0 3.29e-01 98.7% 46.3%
1g43A00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.52 43.0 3.53e-01 100.0% 93.8%
2xbtA00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.51 43.0 3.55e-01 100.0% 93.0%
6sl4A00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.51 43.0 3.55e-01 97.4% 91.3%
2o8qA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 41.0 3.54e-01 100.0% 54.9%
3uh8A00 2.60.40.3350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.83e-01 100.0% 73.7%
4oumA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.69e-01 100.0% 93.2%
1l9mA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 4.11e-01 100.0% 84.5%
1iarB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 4.01e-01 100.0% 83.3%
2j1aA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 43.0 3.59e-01 100.0% 53.2%
ECOD (87)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964292 1.1.13.38 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_BR0599 0.94 85.0 7.31e-01 100.0% 65.5%
4026674 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.77 68.0 6.76e-01 100.0% 91.3%
1281033 1.1.7.33 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF4438 0.77 69.0 5.42e-01 100.0% 75.6%
4995824 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.75 66.0 6.75e-01 97.4% 100.0%
3945528 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.75 66.0 6.51e-01 100.0% 91.3%
4194551 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.74 60.0 6.11e-01 100.0% 90.7%
4197746 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.74 60.0 5.85e-01 100.0% 80.0%
4066146 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 60.0 5.43e-01 100.0% 65.7%
3180314 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 65.0 6.30e-01 100.0% 96.5%
4391995 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.71 64.0 6.18e-01 100.0% 95.3%
4166012 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.70 58.0 5.90e-01 100.0% 94.7%
4083044 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.70 58.0 5.86e-01 100.0% 94.7%
4959198 3613.1.1.0 beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.69 54.0 4.47e-01 85.5% 93.5%
4666540 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.68 61.0 5.90e-01 100.0% 96.5%
4061526 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.68 59.0 5.47e-01 100.0% 96.0%
4366786 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.67 58.0 5.21e-01 100.0% 85.5%
3277790 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.67 58.0 5.29e-01 100.0% 93.3%
4946101 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 58.0 5.26e-01 100.0% 90.5%
3405613 1.1.7.4 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 0.66 59.0 4.77e-01 100.0% 74.5%
3178145 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 58.0 4.72e-01 100.0% 70.7%
3945286 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 58.0 5.26e-01 100.0% 91.4%
5011201 3613.1.1.0 beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.66 53.0 4.92e-01 86.8% 94.7%
5064548 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.66 40.0 4.59e-01 73.7% 86.8%
4218574 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 58.0 5.42e-01 98.7% 98.9%
4373113 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 58.0 5.23e-01 100.0% 91.4%
4944696 1.1.7.138 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › NAD_binding_1 0.66 58.0 5.32e-01 100.0% 94.0%
4980898 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 57.0 5.30e-01 100.0% 97.0%
4207197 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 57.0 5.30e-01 100.0% 95.0%
4361509 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.65 57.0 5.27e-01 100.0% 96.0%
5069408 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.65 57.0 5.42e-01 100.0% 98.9%
4994549 4.1.1.95 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.65 46.0 3.59e-01 75.0% 50.3%
5037204 4.1.1.95 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.65 47.0 4.01e-01 76.3% 67.5%
4937910 4.1.1.95 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.65 47.0 3.91e-01 76.3% 62.3%
5028926 4.1.1.95 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.65 47.0 3.82e-01 76.3% 57.9%
3969656 1.1.7.24 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.64 56.0 5.38e-01 100.0% 95.6%
4854141 4.1.1.295 beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 0.64 46.0 3.83e-01 75.0% 63.8%
4358801 4.1.1.178 beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.64 46.0 4.04e-01 75.0% 67.3%
4357819 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.64 45.0 4.66e-01 73.7% 81.4%
5054535 4.1.1.95 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.63 46.0 4.07e-01 76.3% 74.5%
4601878 4.1.1.295 beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 0.63 46.0 3.83e-01 76.3% 62.3%
4177510 4.1.1.295 beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 0.63 45.0 3.84e-01 75.0% 60.8%
3340031 4.1.1.295 beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 0.63 45.0 3.74e-01 75.0% 61.5%
3821919 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.63 43.0 4.66e-01 72.4% 88.3%
4421229 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.63 45.0 4.10e-01 75.0% 69.9%
3484214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 45.0 3.54e-01 75.0% 61.3%
4263339 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.63 45.0 4.46e-01 75.0% 85.0%
4977697 4.1.1.95 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.63 45.0 4.00e-01 76.3% 71.7%
4167587 4.1.1.178 beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.63 45.0 4.33e-01 75.0% 88.2%
4807995 4.1.1.314 beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_uL24m-like 0.63 51.0 3.59e-01 90.8% 38.9%
4452122 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.63 45.0 3.87e-01 76.3% 88.6%
4639331 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.63 45.0 3.80e-01 75.0% 97.6%
3222146 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.63 43.0 4.57e-01 73.7% 83.1%
3375181 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.63 44.0 3.61e-01 75.0% 71.7%
3385958 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.62 43.0 4.50e-01 72.4% 100.0%
4180317 4.1.1.295 beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 0.62 45.0 3.82e-01 76.3% 64.8%
4071168 4.1.1.95 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.62 45.0 3.91e-01 76.3% 70.4%
3254253 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.62 45.0 3.63e-01 77.6% 67.7%
4181687 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.62 44.0 4.00e-01 75.0% 98.1%
3300738 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.61 45.0 3.64e-01 77.6% 72.7%
4171942 4.1.1.178 beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.61 43.0 3.92e-01 75.0% 100.0%
3188774 4.1.1.146 beta barrels › SH3 › SH3 › SH3 › Ribosomal_uL24m-like 0.60 50.0 3.31e-01 92.1% 38.7%
3440094 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.60 44.0 4.82e-01 100.0% 98.3%
3741069 4.1.1.314 beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_uL24m-like 0.58 48.0 3.32e-01 90.8% 50.6%
3296865 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.58 43.0 3.90e-01 100.0% 57.1%
3265105 11.1.1.802 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 0.58 49.0 4.63e-01 100.0% 77.9%
3358753 4.1.1.381 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5 0.58 43.0 3.36e-01 100.0% 36.4%
3789132 4.1.1.146 beta barrels › SH3 › SH3 › SH3 › Ribosomal_uL24m-like 0.58 47.0 3.44e-01 92.1% 60.4%
3202614 4.1.1.146 beta barrels › SH3 › SH3 › SH3 › Ribosomal_uL24m-like 0.57 48.0 3.16e-01 93.4% 38.8%
3882924 12.5.1.6 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › FIIND 0.57 47.0 3.92e-01 93.4% 74.3%
3636432 4.1.1.314 beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_uL24m-like 0.57 47.0 3.37e-01 92.1% 44.6%
3413714 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.57 46.0 3.36e-01 89.5% 60.0%
3198011 11.1.1.507 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3712 0.56 48.0 3.94e-01 100.0% 67.1%
3925197 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.56 46.0 3.25e-01 90.8% 61.2%
3795823 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.56 45.0 3.23e-01 90.8% 60.0%
4883889 11.1.1.18 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LTD 0.56 48.0 4.28e-01 100.0% 87.5%
3700010 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 46.0 3.15e-01 92.1% 42.4%
3858089 11.1.1.991 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28112 0.56 47.0 4.34e-01 100.0% 75.2%
3892416 11.1.1.18 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LTD 0.55 47.0 4.16e-01 100.0% 81.7%
4280799 11.1.1.18 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LTD 0.55 47.0 4.08e-01 100.0% 77.6%
4026161 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.55 45.0 3.82e-01 89.5% 84.8%
3403524 11.1.1.18 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LTD 0.55 46.0 4.11e-01 100.0% 79.2%
3925049 11.1.1.18 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LTD 0.54 45.0 3.99e-01 100.0% 77.6%
5054099 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 4.28e-01 100.0% 88.0%
3680821 11.1.1.51 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.52 43.0 3.59e-01 100.0% 73.9%
3250649 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 4.00e-01 100.0% 72.4%
3938261 4.1.1.360 beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.50 42.0 3.39e-01 100.0% 46.7%
3598283 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.50 44.0 3.71e-01 98.7% 86.9%