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SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00148

Bact-Vir

SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00148

Identity

Kingdom:
phage

Quality

93.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-174
PDB
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5lz6A00 2.60.120.680 Mainly Beta › Sandwich › Jelly Rolls › GOLD domain 0.71 43.0 4.97e-01 98.2% 81.0%
1sppB00 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.70 41.0 4.90e-01 100.0% 85.7%
7wqxA01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.66 41.0 4.97e-01 100.0% 97.2%
2waoA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.64 40.0 4.83e-01 100.0% 93.7%
2bnmA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 33.0 3.79e-01 100.0% 66.7%
2wq4A01 2.60.120.760 Mainly Beta › Sandwich › Jelly Rolls › 0.63 46.0 5.17e-01 100.0% 96.9%
2wnoA01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.63 40.0 4.81e-01 100.0% 94.7%
5jpnB04 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.63 40.0 4.60e-01 100.0% 87.6%
3demA03 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.62 38.0 4.51e-01 100.0% 89.5%
6v55A01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.62 38.0 4.56e-01 100.0% 92.0%
3winE03 2.60.120.1090 Mainly Beta › Sandwich › Jelly Rolls › 0.60 38.0 4.57e-01 98.8% 97.3%
5xnrA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 43.0 4.89e-01 99.4% 98.4%
1f15B00 2.60.120.530 Mainly Beta › Sandwich › Jelly Rolls › Cucumovirus coat protein, subunit A 0.60 47.0 4.51e-01 100.0% 72.6%
2qfeA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.59 41.0 4.42e-01 100.0% 84.9%
4msvA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.58 45.0 4.98e-01 100.0% 99.3%
3zn4A00 2.60.120.1180 Mainly Beta › Sandwich › Jelly Rolls › 0.58 44.0 4.68e-01 94.0% 88.6%
4zxeC00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 44.0 4.81e-01 99.4% 96.3%
1s55A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.58 48.0 4.97e-01 100.0% 94.2%
1yi9A01 2.60.120.310 Mainly Beta › Sandwich › Jelly Rolls › Copper type II, ascorbate-dependent monooxygenase, N-terminal domain 0.58 44.0 4.61e-01 100.0% 85.9%
3zm8A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 42.0 4.69e-01 99.4% 97.6%
1df0A03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.58 44.0 4.83e-01 100.0% 98.5%
1kxgA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.58 46.0 4.90e-01 100.0% 96.5%
1e57B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 47.0 4.58e-01 100.0% 79.2%
1js8B02 2.60.310.10 Mainly Beta › Sandwich › Hemocyanin; Chain: A, domain 2 › Haemocyanin C-terminal domain 0.57 34.0 4.15e-01 82.1% 93.3%
4zelB01 2.60.120.310 Mainly Beta › Sandwich › Jelly Rolls › Copper type II, ascorbate-dependent monooxygenase, N-terminal domain 0.57 44.0 4.70e-01 100.0% 95.1%
1tg7A05 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 39.0 3.88e-01 99.4% 66.5%
2a1xA00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.56 38.0 3.38e-01 100.0% 45.5%
1wmdA02 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.56 39.0 4.48e-01 99.4% 100.0%
1k3iA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 45.0 4.70e-01 100.0% 92.2%
1w8oA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 45.0 4.87e-01 100.0% 99.3%
3kmhA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 34.0 3.12e-01 100.0% 47.2%
4qawH03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 40.0 4.40e-01 99.4% 95.5%
6mnjA01 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 4.68e-01 99.4% 96.1%
6mw4A01 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.54 39.0 4.38e-01 98.2% 97.7%
2vngA00 2.60.120.1060 Mainly Beta › Sandwich › Jelly Rolls › NPCBM/NEW2 domain 0.53 49.0 4.91e-01 100.0% 95.9%
1ji6A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 41.0 4.22e-01 100.0% 84.6%
1opoC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 4.62e-01 100.0% 93.9%
6mrmC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 4.60e-01 100.0% 92.3%
3ks7A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.52 48.0 4.78e-01 100.0% 96.6%
2izwC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 4.31e-01 100.0% 77.4%
5yblD01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.52 35.0 3.07e-01 100.0% 45.5%
3iiiA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 47.0 4.65e-01 100.0% 97.8%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 33.0 3.95e-01 96.4% 98.2%
4lr4A01 2.60.120.1420 Mainly Beta › Sandwich › Jelly Rolls › 0.51 37.0 3.71e-01 100.0% 72.2%
2wkkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 4.37e-01 98.2% 95.3%
2vovA00 2.60.120.1220 Mainly Beta › Sandwich › Jelly Rolls › 0.51 46.0 3.86e-01 98.8% 85.5%
5m0tB00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.51 36.0 3.05e-01 100.0% 43.4%
1b35A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 46.0 3.99e-01 100.0% 73.5%
2gysA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 28.0 3.55e-01 98.8% 94.7%
4y5tB00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.50 35.0 3.00e-01 100.0% 42.1%
4d8mA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 42.0 4.21e-01 99.4% 87.6%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3246388 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.72 44.0 5.20e-01 100.0% 86.6%
3348395 10.2.1.55 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.72 42.0 5.17e-01 100.0% 92.4%
3868830 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.71 42.0 4.38e-01 100.0% 61.9%
3245736 10.4.1.19 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › Glycoprotein 0.71 41.0 4.99e-01 100.0% 89.5%
3781016 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.70 43.0 4.89e-01 100.0% 81.6%
3708492 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.68 41.0 5.09e-01 100.0% 96.2%
5058946 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.68 42.0 5.15e-01 100.0% 98.1%
3701810 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.66 44.0 5.15e-01 100.0% 95.0%
3748555 10.32.1.216 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MAM 0.66 44.0 5.19e-01 99.4% 98.3%
4966023 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.66 46.0 5.30e-01 100.0% 96.8%
3212672 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.66 41.0 4.95e-01 98.2% 94.5%
3241410 10.32.1.218 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7154 0.64 42.0 4.99e-01 100.0% 99.1%
4172277 10.32.1.238 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29980 0.63 44.0 4.94e-01 100.0% 92.3%
3236909 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 37.0 4.35e-01 100.0% 83.5%
3502327 10.32.1.213 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 0.63 43.0 4.95e-01 99.4% 97.5%
4341145 10.32.1.238 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29980 0.62 46.0 4.95e-01 100.0% 90.7%
3219782 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 42.0 4.64e-01 100.0% 85.9%
3256840 10.2.1.55 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.62 43.0 4.93e-01 98.8% 98.3%
3886059 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.61 48.0 4.95e-01 100.0% 85.6%
3628503 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.61 48.0 5.05e-01 100.0% 90.3%
3844538 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 50.0 5.13e-01 98.2% 90.6%
3935543 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.60 40.0 4.63e-01 99.4% 93.3%
4162574 10.32.1.238 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29980 0.60 42.0 4.70e-01 100.0% 91.5%
3622745 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.60 39.0 4.03e-01 100.0% 68.8%
3507371 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.60 38.0 4.31e-01 100.0% 86.7%
3692007 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.59 45.0 4.84e-01 100.0% 91.7%
4002229 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.59 39.0 4.40e-01 100.0% 86.2%
5050764 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 38.0 4.52e-01 99.4% 95.7%
3619734 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.59 40.0 4.45e-01 100.0% 88.5%
3831284 207.1.1.465 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_3, LRR_4 0.59 38.0 2.82e-01 99.4% 23.7%
3793260 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.58 37.0 3.91e-01 100.0% 70.0%
4473722 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.58 37.0 4.40e-01 98.2% 93.9%
3219060 10.4.1.33 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_M02D8_5_3rd 0.58 35.0 4.09e-01 100.0% 84.2%
3395233 11.1.1.938 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GD_N 0.58 29.0 3.68e-01 94.6% 80.0%
3215026 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.58 37.0 3.87e-01 100.0% 69.0%
3233837 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.58 39.0 4.34e-01 100.0% 87.7%
3598580 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 45.0 4.73e-01 100.0% 91.3%
5050550 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 40.0 4.64e-01 97.6% 100.0%
3906314 10.3.1.1 beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.57 47.0 4.95e-01 100.0% 95.4%
3496886 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.57 40.0 4.13e-01 100.0% 75.0%
3598266 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 45.0 4.81e-01 100.0% 94.0%
5038720 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 39.0 4.44e-01 94.6% 98.3%
1123 10.32.1.2 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.56 45.0 4.84e-01 100.0% 100.0%
4501238 207.1.1.37 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › C-JID 0.56 40.0 3.59e-01 100.0% 51.4%
151167 10.3.1.1 beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.55 45.0 4.66e-01 100.0% 92.9%
3497743 10.12.1.5 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C 0.55 36.0 3.74e-01 100.0% 70.3%
3607218 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 42.0 4.08e-01 100.0% 72.4%
5067883 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.55 39.0 4.25e-01 100.0% 90.4%
2706981 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 44.0 4.28e-01 100.0% 79.0%
3404051 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 45.0 4.74e-01 100.0% 96.8%
3938131 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 30.0 3.66e-01 82.7% 85.7%
4340167 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 45.0 4.67e-01 99.4% 97.5%
3562185 10.3.1.1 beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.53 43.0 4.43e-01 100.0% 89.0%
5051002 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 46.0 4.71e-01 100.0% 98.8%
1158353 10.32.1.30 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › NPCBM 0.53 48.0 4.70e-01 100.0% 90.1%
3199216 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.53 45.0 4.60e-01 99.4% 96.9%
2542980 10.2.1.7 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.53 46.0 4.39e-01 100.0% 81.7%
3231211 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.52 34.0 3.89e-01 100.0% 89.6%
3466694 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.51 36.0 3.87e-01 100.0% 85.0%
3947830 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 45.0 4.38e-01 100.0% 85.9%
3601261 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 43.0 4.11e-01 100.0% 77.9%
4477054 10.32.1.31 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C 0.51 46.0 4.24e-01 100.0% 99.5%