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SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00194
Bact-VirSR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00194
Identity
- Kingdom:
- phage
Quality
75.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 42-127
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1totA00 | 3.30.60.90 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Zinc finger, ZZ-type | 0.66 | 38.0 | 4.64e-01 | 74.4% | 94.2% |
| 2csvA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.61 | 32.0 | 3.49e-01 | 73.3% | 58.3% |
| 2bayE00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.61 | 41.0 | 4.77e-01 | 81.4% | 100.0% |
| 3mhsA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.59 | 38.0 | 3.34e-01 | 79.1% | 44.1% |
| 2uzgA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.56 | 37.0 | 3.62e-01 | 77.9% | 60.0% |
| 1olzA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 37.0 | 2.35e-01 | 70.9% | 98.1% |
| 3lrqB00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 41.0 | 4.23e-01 | 82.6% | 87.5% |
| 1wgmA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.53 | 37.0 | 4.01e-01 | 82.6% | 86.3% |
| 4fo9A02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.53 | 41.0 | 3.69e-01 | 81.4% | 63.2% |
| 2cklB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.53 | 39.0 | 4.23e-01 | 82.6% | 95.8% |
| 6e55A01 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.52 | 30.0 | 3.17e-01 | 70.9% | 62.2% |
| 3i2dA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.52 | 39.0 | 3.51e-01 | 81.4% | 61.3% |
| 3ztgA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.52 | 38.0 | 3.75e-01 | 82.6% | 72.8% |
| 2y43A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.52 | 38.0 | 3.83e-01 | 82.6% | 77.3% |
| 5k19A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 40.0 | 2.67e-01 | 84.9% | 39.6% |
| 2cklA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.51 | 39.0 | 3.74e-01 | 82.6% | 71.4% |
| 4wz2C00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.51 | 36.0 | 3.85e-01 | 82.6% | 87.8% |
| 3vk6A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.51 | 32.0 | 3.75e-01 | 70.9% | 93.2% |
| 5dinA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.51 | 36.0 | 3.30e-01 | 82.6% | 55.0% |
ECOD (64)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3761049 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.67 | 38.0 | 3.54e-01 | 76.7% | 44.8% |
| 3726259 | 904.1.1.3 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › ANCHR-like_BBOX | 0.65 | 42.0 | 4.95e-01 | 81.4% | 95.0% |
| 3517104 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.63 | 38.0 | 3.50e-01 | 77.9% | 47.3% |
| 3741385 | 377.1.1.12 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C5HC2 | 0.62 | 37.0 | 3.23e-01 | 79.1% | 37.8% |
| 3625527 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.61 | 38.0 | 4.55e-01 | 75.6% | 98.2% |
| 3623715 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 40.0 | 4.51e-01 | 79.1% | 93.8% |
| 4025808 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 37.0 | 4.44e-01 | 76.7% | 100.0% |
| 3517439 | 375.1.1.25 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Tfb4 | 0.59 | 33.0 | 3.83e-01 | 77.9% | 78.3% |
| 3204280 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.58 | 41.0 | 4.21e-01 | 84.9% | 75.3% |
| 3598564 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.58 | 36.0 | 4.30e-01 | 82.6% | 100.0% |
| 4935701 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.57 | 45.0 | 3.16e-01 | 88.4% | 40.9% |
| 3473204 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.56 | 39.0 | 4.37e-01 | 82.6% | 95.4% |
| 3532400 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.55 | 36.0 | 4.13e-01 | 74.4% | 89.2% |
| 3347073 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.55 | 38.0 | 3.66e-01 | 82.6% | 63.0% |
| 3724775 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.55 | 41.0 | 3.99e-01 | 82.6% | 84.0% |
| 3783329 | 376.1.1.97 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RING_ZNF598 | 0.54 | 34.0 | 3.43e-01 | 74.4% | 62.2% |
| 3594796 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.54 | 40.0 | 3.48e-01 | 80.2% | 55.6% |
| 3216815 | 376.1.1.6 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-MIZ | 0.54 | 41.0 | 3.56e-01 | 81.4% | 57.7% |
| 3718434 | 376.1.1.6 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-MIZ | 0.54 | 40.0 | 3.61e-01 | 80.2% | 61.7% |
| 3264295 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.53 | 40.0 | 4.32e-01 | 82.6% | 97.1% |
| 3844071 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.53 | 38.0 | 4.01e-01 | 82.6% | 85.3% |
| 3256291 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.53 | 38.0 | 4.08e-01 | 82.6% | 91.4% |
| 3633878 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.53 | 39.0 | 3.52e-01 | 82.6% | 57.4% |
| 3720672 | 109.4.1.1591 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › U-box | 0.53 | 38.0 | 2.65e-01 | 82.6% | 23.2% |
| 3275027 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.53 | 38.0 | 3.46e-01 | 82.6% | 56.5% |
| 3691750 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.53 | 38.0 | 3.16e-01 | 82.6% | 43.6% |
| 3855040 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.53 | 35.0 | 3.65e-01 | 81.4% | 73.8% |
| 3500342 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.53 | 41.0 | 4.08e-01 | 87.2% | 81.1% |
| 3743942 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.53 | 39.0 | 3.90e-01 | 82.6% | 75.6% |
| 3869469 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.53 | 39.0 | 3.31e-01 | 77.9% | 51.4% |
| 3553170 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.53 | 38.0 | 3.34e-01 | 82.6% | 50.8% |
| 3593825 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.53 | 41.0 | 4.14e-01 | 82.6% | 90.6% |
| 3724650 | 376.1.1.6 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-MIZ | 0.52 | 40.0 | 3.52e-01 | 81.4% | 60.0% |
| 3491906 | 376.1.1.66 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_16 | 0.52 | 37.0 | 3.97e-01 | 80.2% | 85.3% |
| 3260274 | 376.1.1.6 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-MIZ | 0.52 | 40.0 | 3.52e-01 | 81.4% | 60.0% |
| 3598873 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.52 | 40.0 | 3.65e-01 | 82.6% | 61.4% |
| 2138158 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.52 | 36.0 | 3.21e-01 | 82.6% | 50.0% |
| 3720822 | 376.1.1.6 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-MIZ | 0.52 | 39.0 | 3.32e-01 | 80.2% | 60.0% |
| 3803149 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.52 | 36.0 | 3.15e-01 | 82.6% | 46.7% |
| 4021607 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.52 | 39.0 | 3.42e-01 | 80.2% | 53.8% |
| 2625993 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.52 | 35.0 | 3.82e-01 | 82.6% | 88.4% |
| 3737858 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.52 | 32.0 | 3.66e-01 | 74.4% | 90.0% |
| 3667358 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.52 | 36.0 | 3.46e-01 | 82.6% | 63.0% |
| 3818416 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.51 | 36.0 | 3.76e-01 | 79.1% | 80.0% |
| 4036241 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.51 | 37.0 | 2.94e-01 | 80.2% | 37.6% |
| 3788673 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.51 | 37.0 | 3.76e-01 | 82.6% | 77.6% |
| 3260323 | 376.1.1.6 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-MIZ | 0.51 | 35.0 | 3.73e-01 | 76.7% | 82.7% |
| 3831781 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.51 | 37.0 | 3.84e-01 | 82.6% | 82.5% |
| 3435847 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 36.0 | 2.39e-01 | 74.4% | 27.8% |
| 3202350 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.51 | 38.0 | 3.81e-01 | 79.1% | 81.1% |
| 3729830 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.51 | 37.0 | 3.91e-01 | 82.6% | 88.0% |
| 3606351 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.51 | 40.0 | 3.62e-01 | 83.7% | 64.3% |
| 3270368 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.51 | 36.0 | 3.72e-01 | 82.6% | 80.0% |
| 3517305 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.51 | 38.0 | 3.76e-01 | 82.6% | 73.7% |
| 3550923 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.51 | 38.0 | 3.27e-01 | 81.4% | 50.4% |
| 3521656 | 386.1.1.42 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf_Hakai | 0.51 | 34.0 | 3.39e-01 | 79.1% | 65.6% |
| 4011434 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.51 | 38.0 | 3.76e-01 | 81.4% | 74.7% |
| 3179858 | 376.1.1.15 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Nse | 0.51 | 38.0 | 3.69e-01 | 81.4% | 80.0% |
| None | — | 0.51 | 38.0 | 3.75e-01 | 82.6% | 75.6% | |
| 3406364 | 376.1.1.15 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Nse | 0.51 | 38.0 | 3.52e-01 | 81.4% | 70.8% |
| 4272127 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.51 | 36.0 | 3.57e-01 | 82.6% | 69.5% |
| 3396437 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.50 | 37.0 | 3.87e-01 | 81.4% | 85.0% |
| 3569880 | 376.1.1.6 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-MIZ | 0.50 | 41.0 | 3.49e-01 | 88.4% | 70.7% |
| 3257904 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.50 | 38.0 | 3.70e-01 | 83.7% | 71.0% |