←Back to structures
SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00197
Bact-VirSR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00197
Identity
- Kingdom:
- phage
Quality
65.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-44
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3anwA02 | 3.40.5.50 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.69 | 55.0 | 5.11e-01 | 100.0% | 81.0% |
| 3ajdA01 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.61 | 47.0 | 4.43e-01 | 100.0% | 96.7% |
| 2uvfB02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.57 | 38.0 | 2.20e-01 | 70.7% | 47.7% |
| 1vjwA00 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 41.0 | 3.93e-01 | 100.0% | 100.0% |
| 3ttyA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 37.0 | 3.42e-01 | 90.2% | 53.2% |
| 1inpA01 | 4.10.460.10 | Few Secondary Structures › Irregular › Inositol Polyphosphate 1-phosphatase; domain 1 › Inositol Polyphosphate 1-phosphatase, domain 1 | 0.51 | 37.0 | 3.65e-01 | 82.9% | 89.4% |
| 1h3dA03 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 37.0 | 3.47e-01 | 100.0% | 88.1% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5083883 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.70 | 58.0 | 5.68e-01 | 100.0% | 91.1% |
| 5069341 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.67 | 54.0 | 5.20e-01 | 100.0% | 92.0% |
| 1890284 | 4076.3.1.5 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C | 0.63 | 49.0 | 4.61e-01 | 100.0% | 81.0% |
| 3977412 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.61 | 48.0 | 4.68e-01 | 100.0% | 98.0% |
| 1222072 | 207.2.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 | 0.57 | 38.0 | 2.20e-01 | 70.7% | 46.9% |
| 3563017 | 304.24.1.18 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › TYW2_N | 0.55 | 43.0 | 3.85e-01 | 100.0% | 94.3% |
| 4882532 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.55 | 37.0 | 2.31e-01 | 78.0% | 69.9% |
| 5000640 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.54 | 41.0 | 3.79e-01 | 100.0% | 90.8% |
| 3789453 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.54 | 41.0 | 3.71e-01 | 100.0% | 82.9% |
| 4437344 | 205.1.1.20 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_15 | 0.53 | 41.0 | 3.61e-01 | 100.0% | 82.7% |
| 3397978 | 12.5.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS | 0.51 | 39.0 | 2.65e-01 | 100.0% | 21.5% |