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SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00205

Bact-Vir

SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00205

Identity

Kingdom:
phage

Quality

84.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 176-258
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13391.13 best HNH_2 27.7 2.70e-06 55.4% 95.5%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.74 58.0 5.83e-01 83.1% 97.6%
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.64 50.0 4.21e-01 85.5% 71.8%
2owaA01 1.10.220.150 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Arf GTPase activating protein 0.62 56.0 4.93e-01 98.8% 94.2%
2crwA00 1.10.220.150 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Arf GTPase activating protein 0.61 55.0 4.50e-01 100.0% 75.8%
3lrqB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.59 36.0 3.66e-01 81.9% 61.3%
1jm7A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 34.0 3.25e-01 74.7% 46.6%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.56 36.0 3.45e-01 98.8% 55.8%
2lpbA00 1.10.287.2920 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 31.0 3.22e-01 85.5% 60.5%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3948700 378.1.1.9 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.79 69.0 5.99e-01 94.0% 90.3%
3952776 377.1.1.88 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.79 58.0 6.49e-01 78.3% 98.5%
4966182 378.1.1.9 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.78 67.0 5.78e-01 92.8% 87.2%
4937899 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.78 55.0 5.42e-01 74.7% 68.9%
5049537 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.78 55.0 5.33e-01 77.1% 66.0%
4986026 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.77 58.0 4.46e-01 80.7% 43.8%
4959591 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.76 53.0 5.84e-01 72.3% 95.4%
4932123 377.7.1.2 few secondary structure elements › Glucocorticoid receptor-like › 82 prophage-derived uncharacterized protein ybcO › 82 prophage-derived uncharacterized protein ybcO › HNH 0.76 60.0 6.49e-01 90.4% 100.0%
4981807 378.1.1.9 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.76 69.0 5.55e-01 100.0% 75.5%
3953059 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.75 58.0 5.72e-01 83.1% 98.9%
185780 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.75 58.0 5.55e-01 83.1% 83.5%
4989310 378.1.1.27 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 0.75 57.0 4.32e-01 80.7% 42.9%
3952384 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.74 61.0 5.80e-01 88.0% 96.8%
3952923 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.73 60.0 5.66e-01 88.0% 91.0%
4964156 378.1.1.9 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.72 65.0 5.83e-01 98.8% 91.3%
4998487 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.72 62.0 5.95e-01 97.6% 82.1%
3587782 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.72 61.0 5.51e-01 91.6% 82.7%
3590055 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.72 63.0 5.66e-01 96.4% 83.5%
3307439 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.72 54.0 4.73e-01 79.5% 75.4%
3914801 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.72 56.0 4.81e-01 81.9% 91.2%
3952892 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.72 61.0 5.26e-01 94.0% 60.8%
5019258 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.72 55.0 5.62e-01 81.9% 98.8%
4941657 377.1.1.88 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.72 52.0 5.47e-01 77.1% 100.0%
4999440 378.1.1.27 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 0.71 62.0 6.20e-01 98.8% 92.9%
2485694 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.71 63.0 5.32e-01 97.6% 66.4%
3953524 378.1.1.23 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 0.70 60.0 4.82e-01 91.6% 58.7%
5070853 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.70 55.0 5.50e-01 84.3% 92.9%
4839754 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.70 61.0 5.04e-01 98.8% 75.0%
3317146 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.69 55.0 4.77e-01 84.3% 74.2%
3397473 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.69 60.0 5.29e-01 95.2% 80.8%
3440476 378.1.1.10 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.69 54.0 4.79e-01 84.3% 73.9%
3277754 377.1.1.88 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.69 52.0 5.62e-01 89.2% 97.1%
2991844 378.1.1.10 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.68 57.0 5.21e-01 92.8% 93.6%
2628026 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.68 53.0 3.99e-01 84.3% 41.6%
2859872 378.1.1.10 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.68 54.0 4.21e-01 88.0% 49.2%
3957069 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.68 61.0 4.87e-01 98.8% 68.1%
1684075 378.1.1.10 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.67 55.0 4.40e-01 89.2% 65.3%
3953218 378.1.1.23 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 0.67 61.0 4.90e-01 98.8% 68.4%
3955812 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.67 56.0 5.42e-01 91.6% 98.9%
3561303 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.67 59.0 4.70e-01 97.6% 81.8%
3489023 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.66 59.0 5.20e-01 98.8% 70.0%
4943720 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.65 57.0 5.02e-01 98.8% 96.8%
2449258 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.65 57.0 4.60e-01 98.8% 84.1%
5016552 378.1.1.10 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.65 57.0 5.25e-01 98.8% 100.0%
2462317 4205.1.1.2 a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › GAD-like,T6SS_Tdi1_C 0.60 42.0 3.13e-01 74.7% 27.6%
3936522 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 38.0 3.60e-01 91.6% 57.0%
3759122 386.1.1.213 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_13 0.56 35.0 2.81e-01 91.6% 29.4%
3233590 376.1.1.19 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv 0.55 32.0 3.41e-01 74.7% 64.0%
3711823 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.55 35.0 3.05e-01 78.3% 42.4%
3395622 2498.1.1.5 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13,Peptidase_M13_N 0.51 43.0 2.62e-01 100.0% 33.2%
D2 medium residues 14-67
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08281.19 best Sigma70_r4_2 28.7 1.20e-06 66.7% 64.8%
D3 medium residues 122-173
PDB
Domain cluster: representative
CATH (80)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.88 67.0 6.09e-01 80.8% 71.6%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 65.0 6.31e-01 80.8% 81.0%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 63.0 5.85e-01 76.9% 65.1%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 63.0 6.07e-01 78.8% 79.3%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 64.0 6.24e-01 80.8% 83.9%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 64.0 5.94e-01 80.8% 74.6%
4nvsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.84 57.0 3.96e-01 71.2% 34.8%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.83 59.0 5.90e-01 75.0% 72.2%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 63.0 5.58e-01 80.8% 65.3%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.82 61.0 6.01e-01 78.8% 80.4%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 62.0 5.19e-01 80.8% 54.0%
3e7lA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.82 63.0 6.03e-01 82.7% 73.3%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.82 61.0 6.51e-01 80.8% 93.3%
2llkA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.82 58.0 6.35e-01 75.0% 100.0%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 62.0 5.41e-01 80.8% 61.3%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 60.0 5.19e-01 80.8% 58.7%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 67.0 5.50e-01 90.4% 58.9%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.80 70.0 5.42e-01 96.2% 54.1%
2elhA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 59.0 5.45e-01 78.8% 65.2%
4u7bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 53.0 5.85e-01 71.2% 100.0%
1k78A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 63.0 5.77e-01 86.5% 71.2%
5fo5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 63.0 5.27e-01 88.5% 60.2%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 60.0 4.69e-01 82.7% 46.2%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 60.0 5.43e-01 86.5% 68.6%
3oioA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 61.0 4.75e-01 88.5% 48.2%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 62.0 5.90e-01 90.4% 85.2%
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 62.0 6.00e-01 92.3% 89.8%
3w6vA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 61.0 4.81e-01 90.4% 49.5%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 58.0 5.38e-01 84.6% 78.8%
3szpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 60.0 5.04e-01 88.5% 57.3%
3lsgA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 56.0 5.56e-01 82.7% 94.5%
3oouA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 57.0 5.65e-01 84.6% 94.5%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 56.0 5.56e-01 82.7% 96.4%
4ivnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 61.0 5.36e-01 90.4% 67.1%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 57.0 5.63e-01 84.6% 90.9%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.74 56.0 4.24e-01 84.6% 37.4%
2lvsA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 58.0 6.01e-01 88.5% 98.0%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 59.0 5.06e-01 88.5% 78.6%
4pcqA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 56.0 5.67e-01 82.7% 98.0%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.73 58.0 4.37e-01 86.5% 67.5%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 59.0 4.25e-01 90.4% 70.2%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 55.0 5.42e-01 82.7% 82.1%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 59.0 5.13e-01 88.5% 78.8%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.73 61.0 4.98e-01 92.3% 60.6%
2o3fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 60.0 5.11e-01 90.4% 62.2%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 53.0 5.42e-01 78.8% 84.0%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.72 55.0 4.40e-01 82.7% 45.5%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 56.0 5.58e-01 84.6% 90.7%
1g2hA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 54.0 5.19e-01 84.6% 80.3%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 56.0 5.31e-01 88.5% 92.1%
2mw8A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 54.0 4.96e-01 82.7% 74.6%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.71 59.0 4.73e-01 94.2% 56.3%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 53.0 5.22e-01 82.7% 98.2%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 60.0 5.53e-01 96.2% 83.6%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 58.0 5.04e-01 92.3% 80.2%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 57.0 4.15e-01 92.3% 37.7%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 51.0 5.42e-01 80.8% 95.5%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 58.0 5.23e-01 94.2% 90.3%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 58.0 5.19e-01 94.2% 84.0%
3f8mA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 58.0 5.41e-01 92.3% 90.8%
2dt5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 60.0 5.31e-01 94.2% 82.2%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 56.0 4.95e-01 92.3% 70.5%
2jrtA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 52.0 4.54e-01 86.5% 70.9%
3f2gA00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.68 57.0 3.85e-01 96.2% 26.3%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 4.96e-01 94.2% 76.6%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 56.0 5.27e-01 94.2% 90.6%
1u2wD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 4.24e-01 82.7% 46.8%
3k69A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 54.0 4.04e-01 96.2% 39.3%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 57.0 5.46e-01 98.1% 90.3%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 55.0 4.29e-01 94.2% 50.8%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 52.0 4.44e-01 90.4% 56.4%
3r4kB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 56.0 5.33e-01 96.2% 90.5%
3keoA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 4.77e-01 88.5% 79.2%
3lstA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 4.55e-01 90.4% 59.3%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 5.04e-01 96.2% 90.9%
1k6yA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.63 49.0 5.12e-01 92.3% 100.0%
3bhqA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 49.0 3.37e-01 88.5% 26.2%
2ao9I01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 44.0 3.81e-01 76.9% 47.1%
2o7tA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 50.0 3.46e-01 90.4% 27.6%
4bxoA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.55 41.0 3.86e-01 84.6% 71.6%
ECOD (96)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3890615 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.94 79.0 8.05e-01 88.5% 92.0%
3602714 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.94 69.0 7.73e-01 76.9% 100.0%
4992594 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.90 69.0 7.45e-01 80.8% 95.6%
4963466 101.1.1.368 alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.89 71.0 7.54e-01 84.6% 100.0%
5011648 101.1.1.368 alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.88 73.0 7.46e-01 88.5% 96.0%
3838024 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.85 62.0 6.97e-01 76.9% 100.0%
4946254 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 66.0 6.96e-01 84.6% 95.6%
5016985 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 70.0 7.51e-01 86.5% 100.0%
5052578 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.85 60.0 6.68e-01 75.0% 100.0%
4990647 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 68.0 6.70e-01 86.5% 89.1%
1731538 101.1.1.25 alpha arrays › HTH › HTH › Three-helical HTH › DUF433 0.85 63.0 4.53e-01 78.8% 42.2%
4008322 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.85 66.0 6.53e-01 84.6% 83.6%
3589152 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 66.0 7.04e-01 82.7% 100.0%
3942571 101.1.1.198 alpha arrays › HTH › HTH › Three-helical HTH › KorB 0.84 59.0 5.43e-01 73.1% 70.8%
3283589 101.1.1.368 alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.84 69.0 7.01e-01 88.5% 100.0%
5004841 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 68.0 6.31e-01 88.5% 73.8%
5011649 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 63.0 6.64e-01 82.7% 93.3%
5030025 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 68.0 6.98e-01 88.5% 94.0%
3588801 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 60.0 6.42e-01 76.9% 100.0%
3946793 101.1.1.259 alpha arrays › HTH › HTH › Three-helical HTH › Terminase_5 0.83 61.0 4.66e-01 78.8% 35.7%
5029686 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.83 63.0 5.49e-01 80.8% 58.7%
4971448 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.83 62.0 5.46e-01 80.8% 61.3%
4952035 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.82 69.0 6.54e-01 90.4% 80.0%
4944887 101.1.1.546 alpha arrays › HTH › HTH › Three-helical HTH › ThiN 0.82 63.0 4.68e-01 80.8% 37.5%
5045632 101.1.2.881 alpha arrays › HTH › HTH › winged helix domain › UPF0175 0.82 59.0 6.09e-01 76.9% 86.0%
3904156 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 62.0 6.54e-01 82.7% 100.0%
3967284 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 62.0 5.95e-01 82.7% 73.3%
3985435 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 59.0 6.48e-01 76.9% 100.0%
5053441 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.81 61.0 5.83e-01 80.8% 70.0%
4297623 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 64.0 6.84e-01 88.5% 100.0%
5030797 101.1.11.2 alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.81 59.0 4.93e-01 78.8% 47.8%
4992527 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.81 59.0 5.11e-01 78.8% 53.8%
3411416 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 62.0 6.60e-01 82.7% 100.0%
4992849 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.80 59.0 5.10e-01 78.8% 53.8%
3928067 101.1.1.356 alpha arrays › HTH › HTH › Three-helical HTH › HTH_11 0.80 65.0 6.39e-01 88.5% 85.5%
3929674 101.1.1.195 alpha arrays › HTH › HTH › Three-helical HTH › HTH_5 0.80 65.0 6.62e-01 88.5% 94.0%
4654073 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.80 65.0 5.74e-01 88.5% 66.7%
5071071 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 64.0 5.71e-01 84.6% 64.3%
3204806 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 63.0 6.67e-01 84.6% 97.8%
3937075 101.1.1.62 alpha arrays › HTH › HTH › Three-helical HTH › HTH_24 0.80 64.0 6.37e-01 88.5% 85.5%
4952294 101.1.2.870 alpha arrays › HTH › HTH › winged helix domain › GerE 0.80 68.0 6.73e-01 94.2% 89.1%
3210747 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.80 59.0 6.26e-01 80.8% 91.1%
4937291 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.80 62.0 6.54e-01 84.6% 100.0%
3931679 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 66.0 6.74e-01 90.4% 96.0%
5014241 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.80 67.0 5.67e-01 92.3% 60.0%
3991300 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 64.0 5.47e-01 86.5% 63.7%
4263447 3801.1.1.4 extended segments › ParE2-associated antitoxin 2 (PaaA2) › ParE2-associated antitoxin 2 (PaaA2) › ParE2-associated antitoxin 2 (PaaA2) › UPF0175 0.79 62.0 6.53e-01 84.6% 100.0%
4966880 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.79 68.0 5.52e-01 94.2% 58.9%
3970952 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 63.0 6.20e-01 88.5% 89.1%
5078267 101.1.2.881 alpha arrays › HTH › HTH › winged helix domain › UPF0175 0.78 69.0 6.09e-01 98.1% 77.3%
4965520 101.1.1.556 alpha arrays › HTH › HTH › Three-helical HTH › DUF7317 0.78 66.0 6.50e-01 90.4% 87.3%
5064868 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.78 66.0 5.50e-01 92.3% 57.8%
3938920 101.1.1.397 alpha arrays › HTH › HTH › Three-helical HTH › PF30176 0.78 61.0 6.50e-01 86.5% 97.8%
4970237 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.78 58.0 6.19e-01 80.8% 97.8%
3645591 101.1.1.362 alpha arrays › HTH › HTH › Three-helical HTH › RF-1 0.77 66.0 5.53e-01 96.2% 75.6%
3964284 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 68.0 6.49e-01 98.1% 90.0%
3619451 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 66.0 6.16e-01 94.2% 89.2%
5077693 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.77 60.0 5.08e-01 84.6% 56.5%
4989022 101.1.2.881 alpha arrays › HTH › HTH › winged helix domain › UPF0175 0.77 61.0 6.41e-01 88.5% 100.0%
4992556 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.77 63.0 5.01e-01 90.4% 47.6%
4530329 101.1.8.14 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › UPF0175 0.77 59.0 5.66e-01 84.6% 80.0%
4965811 101.1.1.559 alpha arrays › HTH › HTH › Three-helical HTH › DUF7858 0.77 61.0 5.81e-01 86.5% 76.7%
5028174 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.76 61.0 6.05e-01 88.5% 87.3%
3973662 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 62.0 5.01e-01 90.4% 84.0%
3281262 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.76 58.0 5.77e-01 84.6% 98.2%
4954675 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 59.0 5.52e-01 86.5% 90.8%
5053505 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.76 58.0 5.96e-01 84.6% 92.0%
4034594 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 60.0 5.97e-01 88.5% 94.5%
4987329 101.1.2.881 alpha arrays › HTH › HTH › winged helix domain › UPF0175 0.75 65.0 5.48e-01 94.2% 65.9%
4277585 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 59.0 5.83e-01 86.5% 90.9%
3929142 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 63.0 6.07e-01 94.2% 86.7%
3931341 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 65.0 5.42e-01 98.1% 61.1%
4590066 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.75 61.0 4.78e-01 92.3% 47.8%
4121950 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.74 58.0 5.71e-01 86.5% 94.5%
4094272 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.74 59.0 5.83e-01 88.5% 96.4%
3967873 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.74 59.0 5.81e-01 88.5% 96.4%
3978422 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.74 57.0 5.68e-01 86.5% 96.4%
5045749 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.74 60.0 5.62e-01 90.4% 76.9%
3971083 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 59.0 5.80e-01 88.5% 94.5%
4142269 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.74 58.0 5.76e-01 88.5% 96.4%
3945505 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.74 60.0 4.64e-01 92.3% 67.2%
3286669 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 59.0 5.85e-01 88.5% 92.7%
3944142 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 59.0 5.87e-01 90.4% 98.2%
3429968 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.73 55.0 4.98e-01 80.8% 70.0%
3976759 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.73 60.0 4.88e-01 92.3% 80.0%
3984271 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 61.0 4.87e-01 94.2% 53.3%
4159676 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 56.0 5.53e-01 86.5% 92.7%
4241379 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.72 59.0 5.85e-01 92.3% 96.4%
3979084 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 54.0 5.54e-01 84.6% 98.0%
4225050 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.71 55.0 5.66e-01 86.5% 100.0%
5055780 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 49.0 5.36e-01 73.1% 100.0%
3943601 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 57.0 5.61e-01 88.5% 94.5%
3979732 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 60.0 5.58e-01 94.2% 86.2%
3284075 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.70 54.0 5.36e-01 86.5% 96.4%
3946233 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 52.0 5.15e-01 88.5% 90.9%
3970742 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 50.0 4.97e-01 88.5% 94.5%