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SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00245
Bact-VirSR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00245
Identity
- Kingdom:
- phage
Quality
79.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-77
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3p0jA03 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.65 | 47.0 | 4.28e-01 | 100.0% | 58.9% |
| 3tiiA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.64 | 44.0 | 4.66e-01 | 100.0% | 83.1% |
| 2kl5A00 | 3.50.4.20 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Uncharacterised protein DUF1027 | 0.61 | 43.0 | 3.83e-01 | 74.3% | 60.9% |
| 1m4jA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.61 | 49.0 | 4.17e-01 | 93.2% | 67.7% |
| 1b77A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.60 | 51.0 | 3.59e-01 | 94.6% | 40.4% |
| 1vpkA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.59 | 49.0 | 4.28e-01 | 94.6% | 77.3% |
| 1r9fA01 | 3.30.390.180 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 | 0.59 | 44.0 | 3.96e-01 | 100.0% | 56.0% |
| 4ipuA00 | 3.55.40.10 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain | 0.59 | 50.0 | 4.12e-01 | 95.9% | 66.4% |
| 2lxxA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.58 | 47.0 | 3.93e-01 | 97.3% | 68.4% |
| 3kq5A01 | 1.10.3210.40 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › | 0.57 | 41.0 | 2.96e-01 | 75.7% | 82.4% |
| 1t3yA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.57 | 46.0 | 3.93e-01 | 91.9% | 80.9% |
| 1p9rA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.57 | 40.0 | 3.54e-01 | 74.3% | 91.0% |
| 1hqz800 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.57 | 46.0 | 3.92e-01 | 93.2% | 65.2% |
| 3bh1A03 | 3.40.140.40 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain | 0.56 | 44.0 | 3.63e-01 | 89.2% | 94.5% |
| 4f7oA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.56 | 45.0 | 3.31e-01 | 94.6% | 63.8% |
| 4nkpA01 | 3.30.450.150 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain | 0.56 | 38.0 | 3.22e-01 | 71.6% | 83.8% |
| 1o07A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.56 | 39.0 | 2.52e-01 | 73.0% | 93.8% |
| 3fpwA01 | 3.30.450.150 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain | 0.56 | 38.0 | 3.27e-01 | 71.6% | 84.8% |
| 3w1yB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 45.0 | 4.17e-01 | 97.3% | 96.2% |
| 3obfA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.55 | 38.0 | 2.92e-01 | 73.0% | 80.1% |
| 3bjnA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.54 | 39.0 | 3.00e-01 | 73.0% | 82.7% |
| 1oi0A00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.54 | 47.0 | 4.19e-01 | 100.0% | 94.4% |
| 2opiA00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.54 | 45.0 | 3.28e-01 | 97.3% | 33.7% |
| 2xf1A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.54 | 46.0 | 3.96e-01 | 98.6% | 75.4% |
| 2bbhA01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.53 | 37.0 | 3.00e-01 | 73.0% | 90.7% |
| 3daoA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.53 | 41.0 | 3.75e-01 | 100.0% | 60.6% |
| 6kbyA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 36.0 | 2.37e-01 | 73.0% | 91.7% |
| 4zevA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.52 | 40.0 | 3.63e-01 | 98.6% | 60.7% |
| 4xmqA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 44.0 | 3.61e-01 | 94.6% | 94.7% |
| 4zohB02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.51 | 36.0 | 3.22e-01 | 95.9% | 51.4% |
| 1ysqA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.50 | 39.0 | 2.92e-01 | 82.4% | 100.0% |
| 3floB00 | 1.10.3200.20 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger | 0.50 | 35.0 | 2.68e-01 | 73.0% | 59.4% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2496895 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 48.0 | 4.47e-01 | 100.0% | 58.8% |
| 3961155 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.66 | 49.0 | 4.06e-01 | 79.7% | 43.7% |
| 3593119 | 3351.1.1.0 ↗ | a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 | 0.65 | 53.0 | 4.45e-01 | 91.9% | 83.8% |
| 3781577 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.61 | 41.0 | 2.64e-01 | 83.8% | 13.9% |
| 4678990 | 1.1.3.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ | 0.61 | 52.0 | 4.36e-01 | 100.0% | 68.6% |
| 5042324 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.61 | 42.0 | 3.95e-01 | 71.6% | 77.8% |
| 3260724 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.61 | 50.0 | 3.97e-01 | 94.6% | 83.0% |
| 3170107 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.60 | 46.0 | 3.26e-01 | 97.3% | 26.5% |
| 4935672 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.60 | 52.0 | 4.27e-01 | 100.0% | 92.1% |
| 3503503 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.59 | 50.0 | 4.04e-01 | 93.2% | 79.3% |
| 2392884 | 227.1.1.14 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › gp45-slide_C | 0.59 | 50.0 | 4.31e-01 | 94.6% | 76.7% |
| 4954188 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.59 | 49.0 | 4.01e-01 | 95.9% | 84.6% |
| 3789624 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.58 | 49.0 | 3.99e-01 | 93.2% | 77.1% |
| 3587964 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.58 | 40.0 | 3.47e-01 | 77.0% | 45.0% |
| 3625038 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.57 | 48.0 | 3.94e-01 | 93.2% | 77.1% |
| 3502011 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.57 | 41.0 | 3.96e-01 | 75.7% | 71.8% |
| None | — | 0.57 | 46.0 | 3.25e-01 | 89.2% | 29.2% | |
| 3219022 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.57 | 42.0 | 2.93e-01 | 79.7% | 29.4% |
| 3484685 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.57 | 47.0 | 4.01e-01 | 95.9% | 80.0% |
| 5062453 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.56 | 42.0 | 3.61e-01 | 82.4% | 74.4% |
| 3898477 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.56 | 42.0 | 4.41e-01 | 87.8% | 93.8% |
| 3177995 | 5050.1.1.32 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn | 0.55 | 45.0 | 2.75e-01 | 95.9% | 74.7% |
| 4147605 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.55 | 44.0 | 3.09e-01 | 89.2% | 39.6% |
| 4965123 | 223.2.1.63 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DUF7522 | 0.54 | 36.0 | 3.13e-01 | 98.6% | 42.5% |
| 3174077 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 37.0 | 3.13e-01 | 71.6% | 68.0% |
| 3251045 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.53 | 44.0 | 3.54e-01 | 93.2% | 60.4% |
| 3738420 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.53 | 43.0 | 3.78e-01 | 100.0% | 59.2% |
| 3693130 | 109.3.1.217 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DUF7791 | 0.52 | 38.0 | 2.74e-01 | 78.4% | 49.8% |
| 3590828 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.52 | 45.0 | 4.00e-01 | 100.0% | 80.0% |
| 4033853 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.51 | 37.0 | 3.40e-01 | 100.0% | 57.0% |
| 3586902 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.51 | 39.0 | 3.53e-01 | 100.0% | 60.0% |
| 3178718 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.51 | 41.0 | 3.43e-01 | 91.9% | 70.7% |
| 3737722 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.51 | 41.0 | 3.74e-01 | 100.0% | 63.6% |
| 4585224 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.50 | 40.0 | 3.73e-01 | 90.5% | 85.7% |
| 3589250 | 234.3.1.3 ↗ | a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain › PBECR4 | 0.50 | 44.0 | 3.38e-01 | 98.6% | 41.7% |