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SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00246
Bact-VirSR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00246
Identity
- Kingdom:
- phage
Quality
83.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-64
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x04A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.68 | 46.0 | 3.14e-01 | 72.5% | 83.5% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 47.0 | 4.56e-01 | 96.1% | 66.7% |
| 2x1lB02 | 2.170.220.10 | Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › | 0.63 | 43.0 | 3.83e-01 | 74.5% | 48.7% |
| 1vk0A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.58 | 49.0 | 3.30e-01 | 96.1% | 96.0% |
| 4iz6B03 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.53 | 42.0 | 3.84e-01 | 94.1% | 92.1% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3403335 | 193.1.1.28 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › RLL | 0.61 | 50.0 | 4.21e-01 | 100.0% | 84.0% |
| 3829621 | 2004.1.1.105 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinase-PPPase | 0.59 | 49.0 | 3.38e-01 | 96.1% | 27.0% |