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SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00330

Bact-Vir

SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00330

Identity

Kingdom:
phage

Quality

70.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-79
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.74 46.0 4.07e-01 98.7% 43.4%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.69 45.0 4.15e-01 100.0% 51.0%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 43.0 4.66e-01 97.4% 78.1%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 4.36e-01 98.7% 58.3%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 55.0 4.57e-01 90.9% 65.7%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.65 49.0 5.17e-01 100.0% 94.0%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 54.0 4.71e-01 90.9% 71.8%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 44.0 4.89e-01 100.0% 96.4%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 49.0 4.13e-01 100.0% 48.8%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 53.0 4.86e-01 89.6% 77.0%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.64 46.0 5.01e-01 100.0% 98.3%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 52.0 4.66e-01 90.9% 81.5%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.63 38.0 4.39e-01 92.2% 90.4%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 4.29e-01 94.8% 68.7%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.62 52.0 4.37e-01 94.8% 97.1%
2vldB01 2.70.180.20 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › 0.61 53.0 4.67e-01 100.0% 81.4%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.61 43.0 4.05e-01 100.0% 59.2%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.60 52.0 3.84e-01 100.0% 37.9%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.59 51.0 3.91e-01 100.0% 44.3%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.59 50.0 3.97e-01 98.7% 74.1%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 48.0 4.28e-01 90.9% 69.4%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 4.10e-01 89.6% 85.8%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 45.0 3.81e-01 100.0% 49.6%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 45.0 2.86e-01 89.6% 35.6%
2bhgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 42.0 3.87e-01 79.2% 90.2%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.55 43.0 3.84e-01 100.0% 59.6%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 41.0 3.69e-01 81.8% 87.7%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.54 47.0 4.24e-01 100.0% 100.0%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.54 46.0 4.39e-01 100.0% 98.9%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.53 46.0 4.31e-01 100.0% 98.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.78e-01 100.0% 75.3%
5h9kA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 44.0 3.63e-01 96.1% 67.5%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.53 46.0 4.16e-01 98.7% 91.6%
3hbkA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 44.0 3.25e-01 98.7% 63.2%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 41.0 2.53e-01 85.7% 22.5%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.51 42.0 4.25e-01 94.8% 100.0%
3oblA00 2.40.128.450 Mainly Beta › Beta Barrel › Lipocalin › 0.50 41.0 3.52e-01 93.5% 59.1%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4525683 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.76 48.0 4.17e-01 100.0% 42.4%
3942297 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.73 46.0 4.04e-01 98.7% 43.4%
3976863 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.73 47.0 4.21e-01 100.0% 47.6%
2772566 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.72 45.0 3.98e-01 98.7% 43.0%
4505797 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 52.0 5.59e-01 100.0% 92.3%
3176053 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 58.0 4.83e-01 90.9% 71.5%
4302032 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 50.0 5.39e-01 100.0% 92.3%
3417150 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 57.0 4.39e-01 90.9% 56.5%
3574630 220.1.1.161 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.68 57.0 4.73e-01 90.9% 60.0%
4009281 219.1.1.65 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.67 48.0 4.36e-01 98.7% 56.2%
2570822 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.66 49.0 3.98e-01 100.0% 41.4%
3211870 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 57.0 5.06e-01 94.8% 79.1%
3255850 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 55.0 4.50e-01 90.9% 57.9%
3709314 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 56.0 4.81e-01 94.8% 76.7%
3875067 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 54.0 4.17e-01 90.9% 46.5%
3928136 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 47.0 5.14e-01 100.0% 100.0%
3996204 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 54.0 4.63e-01 90.9% 68.3%
3927363 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 40.0 4.63e-01 90.9% 96.0%
3576021 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 53.0 4.47e-01 90.9% 57.7%
4250705 6.1.1.19 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › RicinB_lectin_2 0.64 56.0 4.46e-01 97.4% 97.4%
3900116 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 55.0 4.79e-01 94.8% 73.9%
4497415 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.63 55.0 4.77e-01 100.0% 76.0%
5035527 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.63 54.0 4.87e-01 98.7% 81.8%
5073193 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.63 54.0 4.75e-01 100.0% 80.0%
4938263 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.63 54.0 4.72e-01 100.0% 78.4%
4970754 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.63 54.0 4.72e-01 98.7% 78.3%
3188313 220.1.1.57 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_20 0.63 52.0 4.34e-01 90.9% 65.9%
4638794 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.63 54.0 4.69e-01 100.0% 74.4%
5029658 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.63 54.0 4.90e-01 100.0% 86.4%
5055513 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.63 54.0 4.76e-01 100.0% 80.8%
4945272 220.5.1.2 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_C 0.62 53.0 4.66e-01 100.0% 76.0%
4931033 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.62 54.0 4.67e-01 100.0% 76.8%
1893314 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.62 54.0 4.67e-01 100.0% 75.4%
4458765 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.62 54.0 4.67e-01 100.0% 76.0%
5034165 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.62 53.0 4.61e-01 98.7% 77.6%
4948685 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.62 53.0 4.79e-01 100.0% 84.1%
4994614 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.62 54.0 4.66e-01 100.0% 76.8%
5000207 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.62 53.0 4.63e-01 100.0% 75.2%
3619619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 44.0 4.60e-01 100.0% 82.9%
5023750 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.61 52.0 4.53e-01 98.7% 76.8%
5039819 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.61 52.0 4.51e-01 100.0% 73.8%
3703933 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.61 46.0 4.96e-01 100.0% 98.5%
3900017 4.1.1.284 ↗ beta barrels › SH3 › SH3 › SH3 › SBNO 0.60 41.0 3.58e-01 94.8% 45.8%
3385461 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.60 47.0 3.83e-01 100.0% 44.8%
4251253 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.59 43.0 3.93e-01 100.0% 57.1%
2700914 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.59 38.0 3.83e-01 90.9% 63.7%
3393983 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.59 48.0 4.27e-01 90.9% 62.7%
3696482 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 42.0 4.07e-01 100.0% 66.3%
7408 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.58 50.0 3.89e-01 100.0% 44.8%
3615787 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.57 41.0 3.03e-01 76.6% 37.3%
3598532 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.57 49.0 3.70e-01 100.0% 39.0%
5056599 219.1.1.51 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.57 48.0 3.93e-01 100.0% 49.3%
3785140 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 46.0 3.99e-01 92.2% 86.4%
3389684 5.1.4.47 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PHTB1_N 0.56 45.0 2.90e-01 85.7% 98.6%
2032855 9.28.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Barrel domain in extracellular arabinanase › Barrel domain in extracellular arabinanase › GH43_C 0.56 49.0 4.55e-01 100.0% 95.0%
1503651 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 40.0 4.02e-01 98.7% 73.8%
3239923 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.56 39.0 3.69e-01 74.0% 94.7%
4024290 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 47.0 3.98e-01 100.0% 86.2%
3721973 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.55 42.0 4.23e-01 100.0% 86.7%
4029739 9.8.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Dipeptidyl peptidase I (cathepsin C), exclusion domain › Dipeptidyl peptidase I (cathepsin C), exclusion domain › CathepsinC_exc 0.55 46.0 4.08e-01 98.7% 95.8%
5079687 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 44.0 2.83e-01 90.9% 37.1%
2887272 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.53 46.0 4.20e-01 100.0% 91.3%
3512816 5.1.4.313 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_BBS7 0.52 43.0 2.79e-01 89.6% 35.7%
3233381 5.1.4.47 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PHTB1_N 0.52 43.0 2.83e-01 90.9% 95.6%
134994 10.1.1.21 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › 3keto-disac_hyd 0.52 44.0 3.25e-01 98.7% 63.2%
3925589 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 42.0 4.38e-01 98.7% 98.6%
3277840 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.52 39.0 2.98e-01 84.4% 92.2%
3432796 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.52 41.0 4.07e-01 85.7% 85.0%
3996278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 44.0 3.80e-01 96.1% 64.2%
185264 222.1.1.19 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FlgA_HD-like 0.50 36.0 3.80e-01 76.6% 91.3%