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SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00016
Bact-VirSR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00016
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-100
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 45.0 | 5.09e-01 | 81.6% | 100.0% |
| 4exrA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 46.0 | 4.96e-01 | 81.6% | 88.9% |
| 4hbrA00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 46.0 | 4.11e-01 | 84.7% | 65.0% |
| 3actA01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.57 | 48.0 | 3.46e-01 | 91.8% | 47.9% |
| 3loyA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 45.0 | 4.50e-01 | 85.7% | 92.1% |
| 1yrvA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.56 | 42.0 | 3.64e-01 | 84.7% | 51.6% |
| 1mhmA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.55 | 40.0 | 3.01e-01 | 76.5% | 65.2% |
| 5z1gB01 | 3.40.50.10480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain | 0.55 | 40.0 | 3.27e-01 | 88.8% | 37.7% |
| 2w18A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 45.0 | 3.21e-01 | 100.0% | 29.1% |
| 6mlyB01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.54 | 44.0 | 3.25e-01 | 87.8% | 40.8% |
| 1nkgA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.54 | 47.0 | 3.45e-01 | 96.9% | 36.7% |
| 6fopA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.54 | 47.0 | 3.60e-01 | 95.9% | 52.2% |
| 5tvfD00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.54 | 39.0 | 2.87e-01 | 76.5% | 65.2% |
| 4ufcA01 | 2.70.98.50 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans | 0.54 | 48.0 | 3.28e-01 | 98.0% | 31.4% |
| 5yjlC02 | 3.20.180.10 | Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like | 0.53 | 39.0 | 3.76e-01 | 76.5% | 99.1% |
| 4oocA00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.53 | 44.0 | 3.38e-01 | 98.0% | 84.7% |
| 4ozxA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 47.0 | 3.36e-01 | 100.0% | 58.9% |
| 2qziA00 | 3.40.1720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Streptococcus thermophilus LMG 18311 protein like › Streptococcus thermophilus LMG 18311 protein like | 0.51 | 39.0 | 3.89e-01 | 80.6% | 97.0% |
| 5upiA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.51 | 44.0 | 3.53e-01 | 93.9% | 57.4% |
| 3ei3A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 43.0 | 3.08e-01 | 100.0% | 41.4% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5044805 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.66 | 45.0 | 5.15e-01 | 70.4% | 98.6% |
| 3487462 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.65 | 45.0 | 4.06e-01 | 70.4% | 93.8% |
| 3588678 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.63 | 41.0 | 4.77e-01 | 70.4% | 100.0% |
| 3822070 | 331.10.2.8 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › SAM_decarbox | 0.60 | 39.0 | 3.78e-01 | 71.4% | 56.5% |
| 3697524 | 9.2.1.7 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › PF30970 | 0.60 | 44.0 | 4.55e-01 | 96.9% | 83.3% |
| 3546354 | 5.1.4.164 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 | 0.59 | 53.0 | 3.53e-01 | 100.0% | 35.2% |
| 4011809 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.59 | 45.0 | 3.00e-01 | 82.7% | 28.0% |
| 3450584 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.59 | 50.0 | 3.45e-01 | 100.0% | 28.6% |
| 3440815 | 5.1.11.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_AT5G49610-like | 0.58 | 53.0 | 3.57e-01 | 100.0% | 28.2% |
| 3441510 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.57 | 52.0 | 3.78e-01 | 100.0% | 37.8% |
| 3514750 | 220.1.1.52 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C | 0.57 | 34.0 | 3.34e-01 | 100.0% | 53.6% |
| 3738512 | 12.3.1.9 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_81 | 0.57 | 49.0 | 3.47e-01 | 95.9% | 42.2% |
| 3805475 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.57 | 49.0 | 3.43e-01 | 95.9% | 34.2% |
| 5012322 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.56 | 45.0 | 3.54e-01 | 84.7% | 63.0% |
| 3462291 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.56 | 51.0 | 3.57e-01 | 100.0% | 31.9% |
| 3445792 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 48.0 | 3.26e-01 | 94.9% | 45.3% |
| 3465992 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 51.0 | 3.52e-01 | 100.0% | 33.9% |
| 3677778 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.56 | 47.0 | 3.30e-01 | 100.0% | 29.2% |
| 3827202 | 5.1.11.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A | 0.56 | 51.0 | 3.88e-01 | 99.0% | 60.0% |
| 3996256 | 12.6.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related | 0.56 | 34.0 | 3.95e-01 | 79.6% | 85.7% |
| 3682839 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.56 | 48.0 | 3.34e-01 | 100.0% | 29.4% |
| 4768813 | 331.10.1.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox | 0.55 | 40.0 | 3.15e-01 | 76.5% | 76.0% |
| 5051182 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.55 | 48.0 | 3.46e-01 | 100.0% | 85.2% |
| 3643793 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.55 | 49.0 | 3.28e-01 | 99.0% | 59.7% |
| 3741046 | 5.1.4.348 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_1st | 0.55 | 50.0 | 3.28e-01 | 100.0% | 36.5% |
| 3388479 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 49.0 | 3.29e-01 | 100.0% | 38.1% |
| 4666231 | 9.1.1.14 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS | 0.54 | 50.0 | 4.05e-01 | 100.0% | 59.4% |
| None | — | 0.54 | 48.0 | 3.20e-01 | 100.0% | 45.2% | |
| 3305495 | 331.10.1.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox | 0.54 | 40.0 | 2.78e-01 | 79.6% | 67.8% |
| 5035423 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.53 | 36.0 | 3.90e-01 | 76.5% | 80.0% |
| 4155618 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.53 | 37.0 | 2.96e-01 | 99.0% | 34.6% |
| 3925491 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.53 | 39.0 | 3.10e-01 | 79.6% | 85.0% |
| 3822639 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.52 | 46.0 | 3.21e-01 | 100.0% | 31.8% |
| 3999576 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.52 | 44.0 | 3.92e-01 | 99.0% | 64.1% |
| 3804495 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.52 | 47.0 | 3.20e-01 | 100.0% | 30.7% |
| 3925078 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 45.0 | 3.13e-01 | 100.0% | 43.4% |
| 5009473 | 243.3.1.77 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Ta0938 | 0.51 | 43.0 | 4.28e-01 | 96.9% | 100.0% |
| 3216358 | 206.1.1.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase | 0.50 | 43.0 | 3.02e-01 | 96.9% | 56.7% |