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SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00032
Bact-VirSR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00032
Identity
- Kingdom:
- phage
Quality
44.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-149
D2
high
residues 163-239
Domain cluster:
rep: SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00244__D2-65
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cwiA00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.74 | 56.0 | 5.96e-01 | 100.0% | 92.6% |
| 4melA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 53.0 | 4.97e-01 | 100.0% | 84.0% |
| 2qjvA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 48.0 | 3.94e-01 | 92.2% | 80.7% |
| 2zxqA05 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 48.0 | 3.71e-01 | 96.1% | 89.9% |
| 3n40P04 | 2.60.40.2400 | Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, domain C | 0.57 | 40.0 | 4.14e-01 | 83.1% | 78.1% |
| 1x8mA01 | 2.60.120.520 | Mainly Beta › Sandwich › Jelly Rolls › pectin degrading enzyme 5-keto 4- deoxyuronate isomerase, domain 1 | 0.57 | 49.0 | 4.32e-01 | 100.0% | 84.4% |
| 1fi2A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 47.0 | 3.54e-01 | 94.8% | 57.2% |
| 2ns5A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 48.0 | 4.69e-01 | 100.0% | 92.9% |
| 1sppB00 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.55 | 44.0 | 4.00e-01 | 92.2% | 98.2% |
| 3hzbC00 | 2.60.20.10 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins | 0.55 | 43.0 | 4.14e-01 | 96.1% | 75.0% |
| 3ndcA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.54 | 47.0 | 4.03e-01 | 97.4% | 92.7% |
| 3hqiA01 | 2.60.210.10 | Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 0.54 | 45.0 | 3.82e-01 | 96.1% | 92.7% |
| 5u55A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 44.0 | 3.87e-01 | 93.5% | 91.0% |
| 2byeA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 47.0 | 4.33e-01 | 100.0% | 96.0% |
| 1va0B02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.54 | 46.0 | 4.01e-01 | 98.7% | 86.3% |
| 3winE03 | 2.60.120.1090 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 45.0 | 4.09e-01 | 96.1% | 96.4% |
| 1sfpA00 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.53 | 43.0 | 3.92e-01 | 93.5% | 97.3% |
| 2pvpA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.53 | 41.0 | 4.36e-01 | 94.8% | 100.0% |
| 1s4dE02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.53 | 45.0 | 3.80e-01 | 98.7% | 82.7% |
| 3s7iB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 45.0 | 3.40e-01 | 93.5% | 49.7% |
| 4hslA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 36.0 | 2.92e-01 | 96.1% | 33.7% |
| 1uijB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 43.0 | 3.44e-01 | 93.5% | 69.1% |
| 3wcyA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 4.09e-01 | 93.5% | 80.2% |
| 1ve2B02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.52 | 45.0 | 4.00e-01 | 98.7% | 90.4% |
| 4nplA00 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.52 | 42.0 | 3.17e-01 | 92.2% | 67.1% |
| 1wc2A00 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.52 | 39.0 | 3.10e-01 | 84.4% | 96.7% |
| 6mfaA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 3.93e-01 | 81.8% | 79.7% |
| 2pn5A01 | 2.60.40.2950 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 39.0 | 3.69e-01 | 81.8% | 81.7% |
| 5cadA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 44.0 | 3.30e-01 | 94.8% | 47.7% |
| 3tcaA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 43.0 | 4.18e-01 | 100.0% | 90.0% |
| 3enuA00 | 2.60.20.10 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins | 0.51 | 42.0 | 3.71e-01 | 96.1% | 61.4% |
| 2kp5A00 | 2.60.20.10 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins | 0.51 | 40.0 | 3.84e-01 | 97.4% | 74.7% |
| 3hqxA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 45.0 | 4.02e-01 | 97.4% | 77.1% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3388082 | 221.1.4.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Nqo1 middle domain-like | 0.67 | 59.0 | 5.97e-01 | 97.4% | 97.3% |
| 5024407 | 221.1.1.16 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › TGS | 0.65 | 55.0 | 5.56e-01 | 100.0% | 97.3% |
| 3806135 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.64 | 58.0 | 5.05e-01 | 100.0% | 81.7% |
| 3232028 | 221.1.1.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DIX | 0.64 | 55.0 | 5.51e-01 | 97.4% | 95.0% |
| 3728630 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.63 | 57.0 | 4.97e-01 | 100.0% | 68.7% |
| 4654230 | 221.1.4.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Nqo1 middle domain-like › SLBB | 0.63 | 51.0 | 5.22e-01 | 100.0% | 92.0% |
| 3414249 | 221.1.1.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DIX | 0.61 | 54.0 | 5.43e-01 | 100.0% | 96.2% |
| 3184727 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.59 | 52.0 | 5.18e-01 | 98.7% | 95.0% |
| 3358195 | 221.1.1.46 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_ICP0_bdg | 0.59 | 52.0 | 4.61e-01 | 100.0% | 73.9% |
| 4382844 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.59 | 49.0 | 4.15e-01 | 92.2% | 80.8% |
| 4946399 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.59 | 52.0 | 5.06e-01 | 100.0% | 91.8% |
| 3811388 | 221.1.1.82 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PADRE | 0.58 | 43.0 | 4.52e-01 | 100.0% | 91.4% |
| 3223710 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.57 | 47.0 | 3.75e-01 | 96.1% | 89.7% |
| 3571451 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.56 | 47.0 | 4.13e-01 | 94.8% | 80.0% |
| 3224397 | 221.1.1.153 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_PRKD1_N | 0.56 | 48.0 | 4.72e-01 | 100.0% | 95.3% |
| 4931335 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 43.0 | 3.65e-01 | 84.4% | 52.3% |
| 5081702 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.55 | 48.0 | 4.24e-01 | 100.0% | 98.3% |
| 4990300 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.54 | 47.0 | 4.04e-01 | 98.7% | 88.8% |
| 3212872 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 44.0 | 3.98e-01 | 96.1% | 99.1% |
| 3434909 | 221.1.1.166 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26130 | 0.53 | 43.0 | 4.50e-01 | 89.6% | 100.0% |
| 5036397 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 43.0 | 4.22e-01 | 89.6% | 100.0% |
| 5025238 | 1137.1.1.0 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain | 0.53 | 45.0 | 3.81e-01 | 98.7% | 86.4% |
| 4144851 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.52 | 42.0 | 3.27e-01 | 94.8% | 57.0% |
| 5027590 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.52 | 46.0 | 3.84e-01 | 100.0% | 74.8% |
| 4596166 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.52 | 44.0 | 4.01e-01 | 94.8% | 89.5% |
| 3214977 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 43.0 | 4.38e-01 | 97.4% | 100.0% |
| 4662228 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.51 | 46.0 | 3.83e-01 | 97.4% | 73.8% |
| 4433561 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.51 | 42.0 | 3.57e-01 | 94.8% | 69.3% |
| 3521317 | 10.12.1.51 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 | 0.51 | 41.0 | 3.07e-01 | 92.2% | 68.4% |
| 3814403 | 221.1.4.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Nqo1 middle domain-like › Ubiq_DUF_assoc | 0.51 | 45.0 | 4.46e-01 | 100.0% | 96.2% |
| 4014171 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.51 | 44.0 | 3.34e-01 | 100.0% | 56.9% |
| 3395025 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.50 | 43.0 | 3.52e-01 | 97.4% | 80.7% |
| 3727573 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.50 | 40.0 | 3.07e-01 | 92.2% | 55.1% |