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SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00055
Bact-VirSR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00055
Identity
- Kingdom:
- phage
Quality
67.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-74
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3p2aA01 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.74 | 38.0 | 5.00e-01 | 100.0% | 97.2% |
| 2jx5A00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.69 | 36.0 | 3.67e-01 | 100.0% | 50.7% |
| 3hhmA03 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.69 | 40.0 | 3.19e-01 | 98.6% | 29.1% |
| 1wspA00 | 2.40.240.130 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › | 0.66 | 35.0 | 3.34e-01 | 100.0% | 42.2% |
| 5c6dA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.65 | 38.0 | 3.36e-01 | 100.0% | 37.4% |
| 1zxhA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.58 | 34.0 | 3.67e-01 | 100.0% | 69.6% |
| 4d2kB00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.58 | 32.0 | 3.13e-01 | 100.0% | 45.0% |
| 1v6eA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.57 | 33.0 | 3.23e-01 | 100.0% | 48.8% |
| 1c44A00 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.56 | 41.0 | 3.48e-01 | 80.0% | 69.9% |
| 2fazA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 32.0 | 3.21e-01 | 100.0% | 51.9% |
| 6kykA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 33.0 | 3.17e-01 | 100.0% | 50.0% |
| 3h7iA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.54 | 41.0 | 4.03e-01 | 84.3% | 100.0% |
| 4cgxA00 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.53 | 47.0 | 3.61e-01 | 100.0% | 91.9% |
| 7ue1B01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 44.0 | 3.56e-01 | 97.1% | 82.6% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3922469 | 604.1.1.200 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Ima1_N | 0.78 | 39.0 | 4.37e-01 | 100.0% | 61.8% |
| 3529980 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.73 | 39.0 | 3.83e-01 | 100.0% | 48.0% |
| 3801584 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.73 | 41.0 | 3.63e-01 | 100.0% | 39.0% |
| 3843692 | 221.1.1.52 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 | 0.72 | 38.0 | 3.79e-01 | 100.0% | 48.0% |
| 4995785 | 221.3.1.0 ↗ | a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains | 0.70 | 40.0 | 4.38e-01 | 100.0% | 70.9% |
| 5010227 | 221.1.1.75 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SAMP2 | 0.64 | 34.0 | 3.52e-01 | 100.0% | 52.3% |
| 5033637 | 221.1.1.75 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SAMP2 | 0.63 | 34.0 | 3.51e-01 | 100.0% | 53.8% |
| 4947243 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.63 | 34.0 | 3.36e-01 | 100.0% | 48.0% |
| 4982816 | 221.1.1.75 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SAMP2 | 0.63 | 34.0 | 3.46e-01 | 100.0% | 49.3% |
| 5051200 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.62 | 33.0 | 3.24e-01 | 100.0% | 43.8% |
| 3889364 | 221.1.1.164 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF29299 | 0.62 | 35.0 | 3.37e-01 | 100.0% | 48.8% |
| 3597108 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.61 | 37.0 | 3.41e-01 | 100.0% | 46.7% |
| 3616223 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.60 | 33.0 | 3.21e-01 | 100.0% | 46.3% |
| 3783322 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.58 | 34.0 | 3.36e-01 | 100.0% | 52.0% |
| 3518216 | 221.1.1.44 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD | 0.57 | 33.0 | 3.29e-01 | 100.0% | 52.0% |
| 3687510 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.57 | 35.0 | 3.39e-01 | 100.0% | 53.8% |
| 4507733 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.54 | 35.0 | 3.44e-01 | 100.0% | 60.0% |
| 3252553 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.53 | 33.0 | 3.29e-01 | 100.0% | 58.7% |
| 3982093 | 268.1.1.1 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 | 0.53 | 43.0 | 3.56e-01 | 94.3% | 82.9% |
| 4341425 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.53 | 45.0 | 3.10e-01 | 98.6% | 81.5% |
| 4938318 | 221.1.1.14 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS | 0.53 | 30.0 | 3.06e-01 | 100.0% | 52.3% |
| 3709956 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.53 | 32.0 | 3.20e-01 | 100.0% | 57.5% |
| 3226366 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.52 | 42.0 | 2.64e-01 | 88.6% | 64.7% |
| 3252830 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.52 | 32.0 | 3.09e-01 | 100.0% | 51.8% |
| 4378587 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.52 | 42.0 | 2.87e-01 | 98.6% | 81.5% |
| 6151 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.51 | 32.0 | 3.17e-01 | 100.0% | 59.2% |
| 3588171 | 101.1.2.25 ↗ | alpha arrays › HTH › HTH › winged helix domain › FUR | 0.51 | 43.0 | 3.51e-01 | 100.0% | 88.3% |
| 5046867 | 212.1.1.3 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N | 0.50 | 37.0 | 2.88e-01 | 80.0% | 57.1% |
| 3793302 | 268.1.1.0 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related | 0.50 | 38.0 | 3.33e-01 | 87.1% | 94.9% |