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SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00067
Bact-VirSR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00067
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-131
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4qjvA03 | 3.30.70.3110 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 29.0 | 3.94e-01 | 81.0% | 72.6% |
| 3ruyA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.68 | 45.0 | 4.26e-01 | 100.0% | 55.2% |
| 1lfpA03 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.66 | 35.0 | 4.21e-01 | 71.6% | 79.5% |
| 4w1vA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.66 | 44.0 | 4.02e-01 | 100.0% | 50.6% |
| 1hi9A02 | 3.30.1360.130 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Dipeptide transport protein | 0.65 | 40.0 | 4.72e-01 | 93.1% | 93.4% |
| 5vyeA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.63 | 41.0 | 4.36e-01 | 100.0% | 74.5% |
| 2iboA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 33.0 | 3.76e-01 | 81.0% | 66.3% |
| 3rq1D01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.63 | 36.0 | 3.31e-01 | 100.0% | 41.8% |
| 1vk8A00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 33.0 | 3.71e-01 | 79.3% | 64.5% |
| 2f1fA02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.63 | 32.0 | 3.82e-01 | 79.3% | 71.8% |
| 3nuiA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.60 | 44.0 | 4.13e-01 | 100.0% | 61.6% |
| 1bqnA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.60 | 36.0 | 3.96e-01 | 70.7% | 73.4% |
| 1kafA00 | 3.90.1150.20 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain | 0.60 | 48.0 | 4.98e-01 | 100.0% | 90.7% |
| 3hmuB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.60 | 44.0 | 3.78e-01 | 100.0% | 48.1% |
| 4i0wA00 | 3.30.70.2980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 37.0 | 4.16e-01 | 96.6% | 80.4% |
| 4mo0A00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.59 | 35.0 | 4.01e-01 | 90.5% | 83.5% |
| 1earA02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.58 | 30.0 | 3.60e-01 | 72.4% | 76.8% |
| 3a2vD02 | 3.30.1020.10 | Alpha Beta › 2-Layer Sandwich › Antioxidant, Horf6; Chain A, domain 2 › Antioxidant, Horf6; Chain A, domain2 | 0.57 | 30.0 | 3.31e-01 | 92.2% | 60.0% |
| 2y23A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 35.0 | 3.66e-01 | 91.4% | 66.3% |
| 1i7qA00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.57 | 41.0 | 2.70e-01 | 75.0% | 42.0% |
| 2c5sA01 | 3.30.2130.30 | Alpha Beta › 2-Layer Sandwich › VC0802-like › | 0.57 | 31.0 | 2.78e-01 | 81.9% | 36.7% |
| 4aimA03 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.57 | 34.0 | 4.11e-01 | 78.4% | 97.2% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.56 | 40.0 | 4.33e-01 | 87.9% | 89.4% |
| 3pcoB04 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.55 | 32.0 | 3.84e-01 | 79.3% | 88.0% |
| 6g4bA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 40.0 | 3.60e-01 | 100.0% | 53.2% |
| 1yqhA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 29.0 | 3.13e-01 | 98.3% | 57.7% |
| 2g0cA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 28.0 | 3.56e-01 | 98.3% | 85.3% |
| 6vudA02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.54 | 34.0 | 4.11e-01 | 88.8% | 100.0% |
| 1lxjA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 29.0 | 3.11e-01 | 98.3% | 59.2% |
| 2b4vA03 | 3.30.70.1970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 34.0 | 3.66e-01 | 78.4% | 75.8% |
| 2y3mA02 | 3.30.1370.130 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.53 | 25.0 | 3.53e-01 | 93.1% | 94.6% |
| 1x9zA02 | 3.30.1370.100 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › MutL, C-terminal domain, regulatory subdomain | 0.52 | 29.0 | 3.26e-01 | 81.0% | 68.5% |
| 1s7hA01 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 30.0 | 3.42e-01 | 78.4% | 82.5% |
| 1vq8E02 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.50 | 32.0 | 3.50e-01 | 100.0% | 78.5% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5026454 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.76 | 35.0 | 4.58e-01 | 82.8% | 78.5% |
| 4990288 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.72 | 36.0 | 4.62e-01 | 81.0% | 84.6% |
| 5060568 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.70 | 32.0 | 4.23e-01 | 81.0% | 81.7% |
| 5025092 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.68 | 36.0 | 4.26e-01 | 98.3% | 76.0% |
| 4586587 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.67 | 32.0 | 4.21e-01 | 80.2% | 85.0% |
| 3742222 | 3016.1.1.10 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P | 0.67 | 44.0 | 4.75e-01 | 100.0% | 78.6% |
| 5075951 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.65 | 42.0 | 4.86e-01 | 100.0% | 93.8% |
| 5075890 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.65 | 41.0 | 4.58e-01 | 100.0% | 82.2% |
| 5039226 | 3016.1.1.19 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › KYNU_C | 0.64 | 39.0 | 4.70e-01 | 95.7% | 98.6% |
| 4995545 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.64 | 41.0 | 4.52e-01 | 100.0% | 80.6% |
| 4972989 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.64 | 42.0 | 4.84e-01 | 93.1% | 96.2% |
| 4467662 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.64 | 39.0 | 4.69e-01 | 98.3% | 100.0% |
| 4966697 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.64 | 42.0 | 4.82e-01 | 93.1% | 96.2% |
| 5033817 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.63 | 42.0 | 4.87e-01 | 93.1% | 97.5% |
| 4140374 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.63 | 43.0 | 4.88e-01 | 95.7% | 96.5% |
| 5001428 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.61 | 37.0 | 4.42e-01 | 93.1% | 93.3% |
| 4990495 | 306.6.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like | 0.61 | 32.0 | 4.00e-01 | 91.4% | 87.7% |
| 4435605 | 306.3.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 | 0.61 | 36.0 | 3.83e-01 | 90.5% | 67.0% |
| 3283649 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.60 | 34.0 | 3.81e-01 | 91.4% | 72.9% |
| 4089899 | 304.120.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer | 0.59 | 35.0 | 4.24e-01 | 70.7% | 90.7% |
| 3433477 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.59 | 45.0 | 4.71e-01 | 100.0% | 88.6% |
| 3590336 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.59 | 41.0 | 3.68e-01 | 100.0% | 48.0% |
| 3987502 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.59 | 41.0 | 3.63e-01 | 100.0% | 47.4% |
| 5009565 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 38.0 | 3.66e-01 | 94.0% | 56.9% |
| 4953268 | 327.11.2.83 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_DUF2096_C | 0.59 | 34.0 | 4.22e-01 | 85.3% | 100.0% |
| 3953647 | 304.26.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP | 0.59 | 32.0 | 3.54e-01 | 79.3% | 64.2% |
| 5049019 | 304.26.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP | 0.59 | 32.0 | 3.38e-01 | 81.0% | 58.3% |
| 4929591 | 306.3.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 | 0.59 | 37.0 | 4.12e-01 | 91.4% | 82.0% |
| 4668511 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.59 | 34.0 | 3.89e-01 | 79.3% | 77.6% |
| 2521280 | 241.5.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › DNA-binding C-terminal domain of the transcription factor MotA › DNA-binding C-terminal domain of the transcription factor MotA › MotCF | 0.58 | 46.0 | 4.70e-01 | 100.0% | 85.2% |
| 4324737 | 306.1.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB | 0.58 | 34.0 | 4.01e-01 | 92.2% | 86.7% |
| 4934946 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.58 | 34.0 | 3.95e-01 | 91.4% | 83.7% |
| 3587507 | 2006.1.1.37 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP+Hydrolase_3 | 0.57 | 41.0 | 3.09e-01 | 74.1% | 48.4% |
| 4058826 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.57 | 33.0 | 3.76e-01 | 79.3% | 76.5% |
| 4033708 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.57 | 34.0 | 3.78e-01 | 79.3% | 75.6% |
| 3946500 | 306.1.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB › PTS_EIIB | 0.57 | 36.0 | 4.13e-01 | 95.7% | 91.3% |
| 5579 | 306.8.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › TM1457-like › TM1457-like › Peptidase_Prp | 0.56 | 40.0 | 4.33e-01 | 87.9% | 89.4% |
| 3618606 | 304.112.1.10 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › Med13_N | 0.56 | 41.0 | 3.00e-01 | 75.9% | 92.7% |
| 3982932 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.56 | 32.0 | 3.70e-01 | 79.3% | 77.6% |
| 4373306 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.56 | 32.0 | 3.88e-01 | 79.3% | 88.0% |
| 5008984 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.55 | 33.0 | 3.70e-01 | 79.3% | 76.7% |
| 4932602 | 327.11.2.13 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd | 0.54 | 34.0 | 3.75e-01 | 78.4% | 77.9% |
| 4229550 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.53 | 31.0 | 3.58e-01 | 80.2% | 78.8% |
| 5000684 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.53 | 43.0 | 4.26e-01 | 100.0% | 84.2% |
| 3859690 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.52 | 45.0 | 3.38e-01 | 98.3% | 83.4% |
| 5078493 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.52 | 44.0 | 4.48e-01 | 100.0% | 93.0% |
| 3839415 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.52 | 41.0 | 4.25e-01 | 97.4% | 90.0% |
| 1885538 | 242.4.1.0 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain | 0.52 | 35.0 | 3.58e-01 | 94.0% | 69.8% |
| 4100251 | 306.1.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB › PTS_EIIB | 0.52 | 35.0 | 3.90e-01 | 94.0% | 88.9% |
| 5071804 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.52 | 31.0 | 3.50e-01 | 93.1% | 76.7% |
| 4528689 | 304.48.1.91 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › PF29796 | 0.52 | 35.0 | 3.27e-01 | 75.0% | 54.0% |
| 4933757 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.52 | 38.0 | 3.70e-01 | 93.1% | 69.2% |
| 2597170 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.51 | 35.0 | 3.03e-01 | 88.8% | 43.8% |
| 3270632 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.51 | 34.0 | 2.95e-01 | 88.8% | 42.6% |