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SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00095
Bact-VirSR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00095
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-115
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zh5A00 | 2.40.128.710 | Mainly Beta › Beta Barrel › Lipocalin › Surface-adhesin protein E | 0.83 | 78.0 | 6.91e-01 | 100.0% | 84.1% |
| 4h3uA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.69 | 47.0 | 4.28e-01 | 70.1% | 90.0% |
| 4z48A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.69 | 54.0 | 4.02e-01 | 83.5% | 82.9% |
| 3k0zA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 46.0 | 4.01e-01 | 70.1% | 89.9% |
| 3fzxA00 | 2.40.360.20 | Mainly Beta › Beta Barrel › YmcC-like fold › | 0.68 | 53.0 | 4.13e-01 | 84.5% | 46.2% |
| 1t17A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.67 | 54.0 | 4.67e-01 | 86.6% | 78.4% |
| 3fidA00 | 2.40.128.140 | Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein | 0.66 | 53.0 | 3.73e-01 | 85.6% | 58.1% |
| 4e1sA00 | 2.40.160.160 | Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain | 0.66 | 57.0 | 4.25e-01 | 94.8% | 93.4% |
| 3g8zA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 47.0 | 4.25e-01 | 74.2% | 85.9% |
| 3grdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 46.0 | 4.16e-01 | 74.2% | 87.9% |
| 3dxoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 44.0 | 4.14e-01 | 70.1% | 94.0% |
| 2gtlN02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.64 | 54.0 | 4.48e-01 | 92.8% | 70.0% |
| 3jv1A00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.63 | 55.0 | 4.54e-01 | 97.9% | 63.7% |
| 4xmeA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.63 | 53.0 | 4.32e-01 | 91.8% | 63.0% |
| 4fqeA00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.63 | 52.0 | 4.37e-01 | 90.7% | 82.4% |
| 3ec9A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 43.0 | 3.96e-01 | 71.1% | 86.0% |
| 3dm8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 44.0 | 3.94e-01 | 73.2% | 91.1% |
| 1cruA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.62 | 47.0 | 3.02e-01 | 79.4% | 38.8% |
| 1sil000 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.62 | 47.0 | 3.17e-01 | 80.4% | 59.1% |
| 3qcmA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.61 | 48.0 | 3.42e-01 | 84.5% | 29.4% |
| 5gv0A00 | 2.40.160.110 | Mainly Beta › Beta Barrel › Porin › | 0.60 | 52.0 | 4.40e-01 | 95.9% | 92.0% |
| 4pswB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 50.0 | 3.34e-01 | 89.7% | 90.7% |
| 4bboA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.60 | 51.0 | 4.94e-01 | 96.9% | 99.1% |
| 4qunA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.59 | 47.0 | 3.34e-01 | 84.5% | 29.7% |
| 4ok4A02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.59 | 45.0 | 3.07e-01 | 81.4% | 76.2% |
| 1pu4A03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.59 | 45.0 | 3.00e-01 | 82.5% | 92.1% |
| 3dcdA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.59 | 44.0 | 3.20e-01 | 81.4% | 92.3% |
| 3mswA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 45.0 | 4.00e-01 | 84.5% | 82.7% |
| 2zxkA00 | 3.40.1500.20 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › | 0.56 | 49.0 | 3.68e-01 | 100.0% | 98.9% |
| 1wzvA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.56 | 47.0 | 4.10e-01 | 91.8% | 62.0% |
| 2vckA00 | 3.40.1500.20 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › | 0.56 | 43.0 | 3.41e-01 | 82.5% | 57.7% |
| 3otlA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 47.0 | 4.07e-01 | 92.8% | 61.4% |
| 5e1vB00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.55 | 44.0 | 3.21e-01 | 87.6% | 50.0% |
| 5mqrA01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.54 | 47.0 | 3.20e-01 | 100.0% | 74.3% |
| 5tf2A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 44.0 | 3.12e-01 | 94.8% | 53.0% |
| 3pgbA01 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.53 | 46.0 | 2.97e-01 | 100.0% | 95.5% |
| 3p9vA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 44.0 | 3.83e-01 | 93.8% | 82.3% |
| 3bvxA04 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.53 | 42.0 | 3.10e-01 | 88.7% | 87.1% |
| 1gyvA00 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.51 | 44.0 | 4.18e-01 | 97.9% | 96.7% |
| 7c5yA02 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 41.0 | 3.56e-01 | 87.6% | 93.5% |
| 3bcwA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 44.0 | 4.34e-01 | 96.9% | 97.1% |
| 2x9oA00 | 3.40.1500.20 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › | 0.50 | 44.0 | 3.36e-01 | 97.9% | 87.6% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3964215 | 897.2.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Protein E › Protein E › Adhesin_E | 0.92 | 87.0 | 8.13e-01 | 99.0% | 96.5% |
| 3969727 | 897.2.1.0 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Protein E › Protein E | 0.91 | 84.0 | 7.10e-01 | 97.9% | 68.7% |
| 3974774 | 897.2.1.0 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Protein E › Protein E | 0.84 | 77.0 | 6.90e-01 | 96.9% | 76.2% |
| 2492102 | 897.2.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Protein E › Protein E › Adhesin_E | 0.80 | 75.0 | 6.40e-01 | 100.0% | 75.5% |
| 3408261 | 243.3.1.35 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF229 | 0.73 | 53.0 | 4.65e-01 | 75.3% | 88.5% |
| 3294325 | 331.3.1.40 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF1997 | 0.71 | 52.0 | 4.98e-01 | 81.4% | 67.3% |
| 3309384 | 9.13.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Dirigent | 0.69 | 58.0 | 5.48e-01 | 91.8% | 89.9% |
| 152970 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.69 | 48.0 | 4.31e-01 | 71.1% | 91.6% |
| 3829563 | 897.1.1.0 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 | 0.69 | 61.0 | 5.14e-01 | 99.0% | 61.8% |
| 136970 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.68 | 46.0 | 4.01e-01 | 70.1% | 89.9% |
| 6326 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.67 | 54.0 | 4.67e-01 | 86.6% | 78.4% |
| 5018904 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.66 | 51.0 | 4.06e-01 | 82.5% | 89.7% |
| 3786637 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.66 | 58.0 | 4.56e-01 | 99.0% | 68.9% |
| 5079230 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.65 | 47.0 | 4.65e-01 | 76.3% | 78.1% |
| 5047323 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.62 | 47.0 | 3.52e-01 | 81.4% | 91.4% |
| 3575810 | 3369.1.1.1 ↗ | beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal | 0.62 | 53.0 | 4.45e-01 | 95.9% | 86.5% |
| 3218203 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.62 | 53.0 | 4.48e-01 | 91.8% | 69.7% |
| 3385986 | 5084.3.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta | 0.62 | 51.0 | 4.14e-01 | 92.8% | 86.4% |
| 3482531 | 3369.1.1.1 ↗ | beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal | 0.62 | 53.0 | 4.54e-01 | 96.9% | 96.2% |
| 3743662 | 9.2.1.2 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Vac_ImportDeg | 0.62 | 53.0 | 4.18e-01 | 95.9% | 90.2% |
| 3486144 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.61 | 49.0 | 3.40e-01 | 85.6% | 30.5% |
| 3701742 | 5.1.4.5 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,CAF1C_H4-bd | 0.61 | 51.0 | 3.23e-01 | 89.7% | 83.7% |
| 3228525 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.61 | 49.0 | 4.75e-01 | 88.7% | 82.7% |
| 4154259 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.61 | 46.0 | 3.34e-01 | 82.5% | 85.1% |
| 1887056 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.60 | 41.0 | 3.89e-01 | 70.1% | 90.8% |
| 3281893 | 71.2.1.1 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › Glycolipid_bind | 0.60 | 52.0 | 4.28e-01 | 97.9% | 93.5% |
| 3913260 | 5087.1.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 › Vit_b-sht_shell | 0.60 | 48.0 | 3.86e-01 | 86.6% | 45.8% |
| 4666811 | 243.3.1.51 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › HalC8_like_N | 0.60 | 47.0 | 4.18e-01 | 86.6% | 82.1% |
| 4944259 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.60 | 51.0 | 3.79e-01 | 91.8% | 91.9% |
| 3496817 | 3369.1.1.1 ↗ | beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal | 0.59 | 50.0 | 4.28e-01 | 95.9% | 95.0% |
| 3320608 | 5.1.4.363 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, eIF2A, CAF1C_H4-bd | 0.58 | 47.0 | 3.07e-01 | 89.7% | 88.8% |
| None | — | 0.58 | 44.0 | 3.16e-01 | 83.5% | 58.1% | |
| 3478745 | 3369.1.1.1 ↗ | beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal | 0.58 | 49.0 | 4.14e-01 | 95.9% | 89.9% |
| 3243080 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.57 | 43.0 | 4.27e-01 | 80.4% | 83.0% |
| 4957188 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 45.0 | 4.30e-01 | 85.6% | 84.3% |
| 4992060 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.56 | 42.0 | 3.59e-01 | 82.5% | 90.9% |
| 3961612 | 881.1.1.8 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C | 0.56 | 42.0 | 3.37e-01 | 80.4% | 40.7% |
| 346609 | 867.1.1.2 ↗ | a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red | 0.56 | 43.0 | 3.36e-01 | 82.5% | 57.7% |
| 5035736 | 71.1.1.26 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF3108 | 0.55 | 47.0 | 3.98e-01 | 96.9% | 80.0% |
| 3490071 | 71.2.1.4 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N | 0.55 | 47.0 | 3.60e-01 | 96.9% | 54.9% |
| 3925946 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 47.0 | 3.08e-01 | 93.8% | 83.6% |
| 4944090 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 43.0 | 4.17e-01 | 88.7% | 95.5% |
| 3673937 | 11.1.1.44 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 | 0.52 | 45.0 | 4.14e-01 | 97.9% | 88.5% |
| 3586734 | 11.1.1.44 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 | 0.52 | 44.0 | 4.04e-01 | 97.9% | 100.0% |
| 3398615 | 11.1.1.44 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 | 0.51 | 44.0 | 4.08e-01 | 97.9% | 92.3% |
| 4322035 | 867.1.1.2 ↗ | a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red | 0.51 | 44.0 | 3.36e-01 | 97.9% | 88.3% |