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SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00101
Bact-VirSR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00101
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-55
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1twfI01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.76 | 49.0 | 4.70e-01 | 85.0% | 56.5% |
| 1krlA00 | 6.20.50.130 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.71 | 52.0 | 5.06e-01 | 85.0% | 72.7% |
| 5umbA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.70 | 51.0 | 3.31e-01 | 100.0% | 17.7% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.70 | 47.0 | 3.60e-01 | 85.0% | 29.3% |
| 4rbnA01 | 3.10.450.330 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 49.0 | 3.47e-01 | 92.5% | 24.8% |
| 2rajA02 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.63 | 53.0 | 3.83e-01 | 100.0% | 32.5% |
| 4fumA01 | 2.20.230.10 | Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. | 0.63 | 46.0 | 3.91e-01 | 85.0% | 79.7% |
| 3p5jB01 | 2.20.25.530 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.62 | 51.0 | 4.24e-01 | 95.0% | 74.3% |
| 1m4zA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.62 | 54.0 | 3.44e-01 | 100.0% | 59.7% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.61 | 46.0 | 4.20e-01 | 82.5% | 61.4% |
| 2cmzA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.61 | 47.0 | 3.68e-01 | 90.0% | 52.7% |
| 4b6dB00 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.60 | 52.0 | 4.64e-01 | 97.5% | 73.7% |
| 3u50C01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 45.0 | 3.19e-01 | 85.0% | 80.3% |
| 2qm0A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 46.0 | 2.92e-01 | 97.5% | 94.0% |
| 1y8fA00 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.57 | 47.0 | 4.44e-01 | 97.5% | 84.3% |
| 2rovA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 46.0 | 3.47e-01 | 100.0% | 34.2% |
| 3ef2A02 | 3.30.460.70 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.57 | 42.0 | 3.04e-01 | 87.5% | 67.4% |
| 1a6aB01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.56 | 44.0 | 3.64e-01 | 100.0% | 53.9% |
| 4rgyA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 46.0 | 2.95e-01 | 100.0% | 96.6% |
| 2xf4A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.56 | 42.0 | 2.84e-01 | 100.0% | 66.7% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 39.0 | 3.14e-01 | 92.5% | 37.0% |
| 3p54A02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.54 | 38.0 | 3.40e-01 | 100.0% | 47.9% |
| 3bt7A02 | 2.40.50.1070 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 40.0 | 2.94e-01 | 95.0% | 97.9% |
| 6u5uG07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.53 | 38.0 | 2.80e-01 | 85.0% | 25.0% |
| 4l0mA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.53 | 40.0 | 2.68e-01 | 100.0% | 77.5% |
| 2iw3A05 | 2.40.50.990 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 42.0 | 3.22e-01 | 100.0% | 45.0% |
| 3wknF00 | 6.20.50.120 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.50 | 34.0 | 3.37e-01 | 85.0% | 65.2% |
| 1dq3A03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.50 | 35.0 | 3.07e-01 | 92.5% | 77.0% |
| 3i3lA02 | 3.30.390.160 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.50 | 40.0 | 3.03e-01 | 100.0% | 49.6% |
ECOD (61)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4946427 | 2004.1.1.308 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 | 0.77 | 61.0 | 3.58e-01 | 100.0% | 10.9% |
| 3447043 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.76 | 56.0 | 5.95e-01 | 80.0% | 91.4% |
| 5034583 | 1001.1.1.0 ↗ | a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 | 0.75 | 52.0 | 4.90e-01 | 85.0% | 60.0% |
| 4944647 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.74 | 60.0 | 5.86e-01 | 97.5% | 82.2% |
| 3929173 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.73 | 58.0 | 4.51e-01 | 97.5% | 41.2% |
| 3308663 | 601.3.1.11 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › PHD_Oberon | 0.73 | 47.0 | 3.14e-01 | 90.0% | 17.9% |
| 3648747 | 376.1.3.62 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_Oberon | 0.72 | 46.0 | 3.69e-01 | 87.5% | 32.5% |
| 3315597 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.71 | 60.0 | 4.91e-01 | 100.0% | 58.2% |
| 3609014 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.71 | 59.0 | 3.74e-01 | 100.0% | 17.4% |
| 3315173 | 243.3.1.46 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SWIM | 0.70 | 54.0 | 3.92e-01 | 87.5% | 32.2% |
| 3594831 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.70 | 60.0 | 5.82e-01 | 100.0% | 95.6% |
| 3718119 | 2004.1.1.348 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SbcC_Walker_B | 0.68 | 55.0 | 3.68e-01 | 95.0% | 24.1% |
| 3297981 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.68 | 55.0 | 5.02e-01 | 100.0% | 67.3% |
| 3210733 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.66 | 58.0 | 5.10e-01 | 100.0% | 73.3% |
| 3232550 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 54.0 | 4.42e-01 | 100.0% | 47.1% |
| 4962280 | 375.1.1.347 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26237 | 0.65 | 45.0 | 4.42e-01 | 80.0% | 66.7% |
| 3434453 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.65 | 49.0 | 4.96e-01 | 97.5% | 94.7% |
| 3383781 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.65 | 51.0 | 4.85e-01 | 100.0% | 76.0% |
| 3257886 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.65 | 50.0 | 3.57e-01 | 100.0% | 26.2% |
| 5041400 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 45.0 | 4.46e-01 | 82.5% | 68.9% |
| 3471264 | 375.10.1.3 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf_DPOE_2 | 0.64 | 53.0 | 4.38e-01 | 100.0% | 57.5% |
| 3633449 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.64 | 51.0 | 3.39e-01 | 100.0% | 21.8% |
| 3902438 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.64 | 49.0 | 3.82e-01 | 100.0% | 35.9% |
| 3820157 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.64 | 45.0 | 3.00e-01 | 85.0% | 17.3% |
| 3815420 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.63 | 55.0 | 4.97e-01 | 100.0% | 89.1% |
| 5046254 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 46.0 | 4.51e-01 | 87.5% | 73.3% |
| 3557649 | 4.8.1.20 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N | 0.62 | 52.0 | 3.91e-01 | 100.0% | 41.9% |
| 3837975 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 50.0 | 3.43e-01 | 100.0% | 24.8% |
| 2485688 | 64.5.1.1 ↗ | beta meanders › WW domain-like › Connector region of RNA helicase HrpB › Connector region of RNA helicase HrpB › CON_HrpB | 0.61 | 43.0 | 4.44e-01 | 85.0% | 88.9% |
| 3739035 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 52.0 | 4.65e-01 | 100.0% | 75.0% |
| 4962274 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 43.0 | 4.23e-01 | 82.5% | 68.9% |
| 3183301 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.61 | 51.0 | 4.68e-01 | 97.5% | 78.2% |
| 4012777 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 43.0 | 4.19e-01 | 85.0% | 71.1% |
| 3461850 | 150.1.1.88 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › PHD_Oberon | 0.59 | 47.0 | 3.27e-01 | 100.0% | 26.1% |
| 4820874 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 44.0 | 3.43e-01 | 95.0% | 34.5% |
| 5028346 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 45.0 | 3.99e-01 | 85.0% | 56.7% |
| 5071179 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 43.0 | 3.81e-01 | 85.0% | 53.3% |
| 3833930 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.59 | 51.0 | 4.62e-01 | 100.0% | 74.5% |
| 3211871 | 2008.1.1.31 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › VRR_NUC | 0.59 | 45.0 | 2.89e-01 | 95.0% | 73.5% |
| 3273866 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.58 | 42.0 | 2.41e-01 | 80.0% | 6.7% |
| 5077499 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.58 | 48.0 | 2.82e-01 | 100.0% | 10.2% |
| 4938178 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 43.0 | 4.32e-01 | 85.0% | 80.0% |
| 3804569 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.58 | 47.0 | 4.70e-01 | 100.0% | 95.0% |
| 2127038 | 2003.2.1.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin,Molybdop_Fe4S4 | 0.57 | 39.0 | 4.10e-01 | 82.5% | 87.9% |
| 3471550 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.56 | 38.0 | 3.91e-01 | 87.5% | 71.4% |
| 5005105 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 43.0 | 3.45e-01 | 90.0% | 44.4% |
| None | — | 0.55 | 40.0 | 2.44e-01 | 97.5% | 9.8% | |
| 955 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.54 | 39.0 | 4.01e-01 | 97.5% | 91.9% |
| 3734963 | 376.1.1.66 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_16 | 0.54 | 41.0 | 4.36e-01 | 85.0% | 100.0% |
| 3651001 | 376.1.1.101 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PHD_Oberon | 0.54 | 41.0 | 2.96e-01 | 100.0% | 26.1% |
| 145843 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.54 | 39.0 | 3.14e-01 | 92.5% | 37.0% |
| 3607612 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.54 | 44.0 | 3.79e-01 | 100.0% | 95.7% |
| 3931594 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 43.0 | 3.44e-01 | 97.5% | 52.2% |
| 4255362 | 3826.1.1.22 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › UPF0236 | 0.54 | 43.0 | 3.16e-01 | 100.0% | 41.5% |
| 3664655 | 601.28.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like › PHD_Oberon | 0.53 | 42.0 | 3.00e-01 | 100.0% | 28.0% |
| 3806101 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.53 | 38.0 | 3.40e-01 | 82.5% | 53.3% |
| 4407102 | 375.1.1.9 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom | 0.52 | 34.0 | 3.36e-01 | 85.0% | 60.0% |
| 3165552 | 375.1.1.9 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom | 0.51 | 35.0 | 3.49e-01 | 82.5% | 68.9% |
| 5018717 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 42.0 | 3.81e-01 | 92.5% | 70.9% |
| 3810220 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.50 | 40.0 | 3.45e-01 | 97.5% | 89.3% |
| 3238004 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.50 | 40.0 | 3.87e-01 | 100.0% | 86.0% |