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SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00159

Bact-Vir

SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00159

Identity

Kingdom:
phage

Quality

72.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-122
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.80 51.0 6.06e-01 84.9% 98.2%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.78 49.0 5.78e-01 81.4% 93.2%
6hswA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.69 51.0 3.25e-01 77.9% 26.6%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 53.0 4.26e-01 91.9% 43.4%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.65 56.0 4.51e-01 91.9% 75.8%
3bf2A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.65 52.0 4.59e-01 86.0% 84.0%
2xgrA00 3.40.570.10 Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A 0.64 55.0 4.19e-01 93.0% 76.6%
1fx3B00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.64 46.0 3.87e-01 75.6% 57.0%
3kh8B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.64 52.0 4.31e-01 88.4% 91.6%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.63 53.0 4.08e-01 93.0% 43.1%
1bh3A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.62 53.0 3.66e-01 94.2% 42.2%
4ojdH01 2.60.98.60 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 0.61 54.0 4.34e-01 97.7% 57.9%
1lshA01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.61 54.0 3.86e-01 100.0% 41.8%
5azpA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.61 46.0 4.80e-01 81.4% 96.3%
3ua3A03 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.61 55.0 4.16e-01 100.0% 94.6%
4rljB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 47.0 3.98e-01 84.9% 88.4%
3fzxA00 2.40.360.20 Mainly Beta › Beta Barrel › YmcC-like fold › 0.60 54.0 4.03e-01 100.0% 47.2%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.59 48.0 4.02e-01 94.2% 49.1%
1ut7B01 2.170.150.80 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain 0.59 43.0 3.87e-01 89.5% 54.4%
3r0qA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.59 52.0 3.96e-01 100.0% 96.6%
5fubA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.58 52.0 4.03e-01 100.0% 96.3%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.58 52.0 4.60e-01 100.0% 74.0%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.57 52.0 4.29e-01 100.0% 57.0%
2bi0A02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 44.0 3.78e-01 84.9% 88.4%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.57 48.0 3.97e-01 97.7% 51.8%
1jkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 46.0 4.03e-01 91.9% 90.6%
4ckmB00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.57 48.0 4.09e-01 95.3% 97.9%
6dnzA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.56 50.0 3.97e-01 100.0% 96.6%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 44.0 3.76e-01 100.0% 52.1%
1wnhA02 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 45.0 4.05e-01 88.4% 83.3%
1of5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 44.0 3.70e-01 89.5% 83.1%
4k7rA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.54 42.0 4.36e-01 84.9% 92.2%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 3.79e-01 95.3% 82.5%
1b7yA00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 44.0 3.15e-01 90.7% 82.6%
2fp8B00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 47.0 3.26e-01 100.0% 53.8%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 3.88e-01 94.2% 95.4%
1jkgB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 3.44e-01 89.5% 84.4%
3pg6B00 3.30.390.130 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.53 42.0 3.80e-01 94.2% 90.3%
5cxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 3.65e-01 88.4% 85.8%
4gb5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 45.0 3.79e-01 95.3% 89.9%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.52 45.0 3.30e-01 96.5% 39.8%
3eyrA00 3.15.10.40 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Uncharacterised protein PF07273 family, DUF1439 0.52 44.0 3.69e-01 100.0% 63.9%
4jhyA00 3.30.530.80 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.52 45.0 3.78e-01 98.8% 69.2%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.62e-01 93.0% 100.0%
4h3uA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 43.0 3.84e-01 95.3% 88.5%
3a76A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.69e-01 95.3% 91.4%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 45.0 4.00e-01 100.0% 99.2%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 43.0 3.65e-01 93.0% 93.7%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 42.0 3.74e-01 96.5% 96.2%
3hk4A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 41.0 3.77e-01 93.0% 94.1%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 41.0 3.48e-01 95.3% 91.0%
3byqA00 3.30.1330.110 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › BB2672 0.50 42.0 3.35e-01 95.3% 68.6%
3fgyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 43.0 3.72e-01 94.2% 91.1%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3593049 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.76 69.0 5.14e-01 100.0% 43.3%
3242425 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.71 65.0 4.97e-01 100.0% 45.8%
3596800 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.71 54.0 4.13e-01 81.4% 65.3%
5078225 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.70 43.0 5.07e-01 79.1% 91.4%
4013356 4178.1.1.0 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.70 53.0 4.25e-01 79.1% 79.4%
3808882 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.69 63.0 4.93e-01 100.0% 58.3%
28449 5084.5.1.11 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.68 53.0 3.67e-01 100.0% 24.9%
3395729 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.67 60.0 4.91e-01 100.0% 53.8%
3937062 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.67 56.0 4.39e-01 90.7% 87.8%
3412367 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.67 60.0 4.73e-01 100.0% 48.1%
3622962 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.67 60.0 4.28e-01 100.0% 40.0%
3718216 4051.1.1.0 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.67 60.0 5.27e-01 98.8% 81.6%
3738577 881.1.1.2 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1 0.66 58.0 4.55e-01 100.0% 64.2%
4668983 4051.1.1.0 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.66 60.0 4.83e-01 100.0% 58.7%
4664187 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.65 60.0 4.87e-01 100.0% 85.8%
3221148 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.65 57.0 3.60e-01 98.8% 41.9%
4011180 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.65 57.0 4.81e-01 100.0% 94.0%
4035804 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.65 59.0 4.86e-01 100.0% 91.3%
4635523 331.3.1.20 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C 0.65 54.0 3.87e-01 91.9% 35.3%
3972298 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.64 53.0 4.42e-01 90.7% 96.7%
3744704 5.1.4.173 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_2nd 0.64 58.0 3.78e-01 100.0% 40.5%
3398140 4.1.1.326 beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.64 48.0 5.10e-01 98.8% 92.0%
4398275 2007.1.19.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like 0.64 58.0 3.38e-01 100.0% 19.0%
4425267 5084.5.1.6 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprB 0.63 55.0 3.58e-01 100.0% 22.5%
3714351 222.1.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.62 51.0 4.25e-01 90.7% 96.8%
3586270 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 53.0 3.42e-01 97.7% 36.1%
3773175 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.61 52.0 4.22e-01 100.0% 68.1%
4823574 4030.1.1.1 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › F_actin_cap_B 0.61 53.0 4.33e-01 95.3% 54.5%
3935161 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 54.0 5.02e-01 96.5% 88.6%
3569021 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.60 51.0 4.12e-01 98.8% 78.4%
3395855 243.5.1.7 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › AKAP28 0.60 49.0 4.35e-01 90.7% 65.4%
4304169 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.60 55.0 4.31e-01 100.0% 85.1%
3917010 243.3.1.20 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › AKAP28 0.60 55.0 4.79e-01 100.0% 72.0%
3289158 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 50.0 4.62e-01 93.0% 96.4%
4008277 5084.5.1.62 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF27458 0.59 52.0 3.55e-01 100.0% 27.2%
3278413 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.58 47.0 4.07e-01 89.5% 88.6%
3512269 79.1.1.16 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › DUF1983 0.58 46.0 4.55e-01 95.3% 81.1%
862806 4200.1.1.2 beta barrels › YmcC-like › YmcC-like › YmcC-like › DUF3108_like 0.58 49.0 3.75e-01 96.5% 40.2%
3843944 243.5.1.7 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › AKAP28 0.58 53.0 4.65e-01 100.0% 72.0%
3813682 5.1.3.260 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_2, b-prop_At3g26010-like 0.57 51.0 3.48e-01 100.0% 31.6%
3326287 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.57 50.0 4.51e-01 100.0% 88.3%
3813082 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.56 49.0 3.91e-01 100.0% 48.1%
3787176 4099.1.1.4 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.56 49.0 4.30e-01 97.7% 64.6%
1790173 243.1.1.39 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TraH_VirB8-like 0.56 46.0 4.12e-01 95.3% 96.9%
6421 243.3.1.4 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Latexin_N 0.55 45.0 4.04e-01 88.4% 84.0%
4561192 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 41.0 4.28e-01 97.7% 96.2%
3954741 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.52 42.0 3.78e-01 95.3% 94.1%
399927 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.51 42.0 3.59e-01 95.3% 83.0%
3451025 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.51 41.0 3.96e-01 89.5% 97.0%
4278326 7503.1.1.0 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.51 45.0 3.89e-01 100.0% 81.5%
4948088 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 45.0 3.58e-01 100.0% 54.9%
139114 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.50 41.0 3.35e-01 95.3% 85.5%
3287916 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.50 41.0 3.67e-01 93.0% 90.0%