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SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00193
Bact-VirSR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00193
Identity
- Kingdom:
- phage
Quality
80.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-68
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5fzsA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.88 | 56.0 | 4.64e-01 | 73.8% | 40.2% |
| 4gywA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.86 | 52.0 | 4.29e-01 | 70.8% | 38.1% |
| 2jbwA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.85 | 69.0 | 5.73e-01 | 84.6% | 62.1% |
| 3ceqA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.85 | 59.0 | 3.85e-01 | 72.3% | 19.2% |
| 3w7tA03 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.83 | 64.0 | 3.78e-01 | 81.5% | 28.2% |
| 2cqsA04 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.80 | 65.0 | 3.93e-01 | 86.2% | 24.3% |
| 1lkoA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.79 | 63.0 | 4.73e-01 | 84.6% | 58.6% |
| 5jc3A02 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.72 | 60.0 | 4.78e-01 | 95.4% | 46.8% |
| 4lzgA01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.72 | 56.0 | 4.87e-01 | 96.9% | 57.0% |
| 1t3dA01 | 1.10.3130.10 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 | 0.70 | 54.0 | 4.15e-01 | 81.5% | 64.3% |
| 2e9fB01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.70 | 47.0 | 4.22e-01 | 70.8% | 53.1% |
| 4rngC00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.70 | 60.0 | 5.56e-01 | 93.8% | 86.7% |
| 6axfA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.69 | 58.0 | 4.83e-01 | 95.4% | 54.7% |
| 4qndA00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.68 | 58.0 | 5.05e-01 | 92.3% | 75.3% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.68 | 52.0 | 5.28e-01 | 83.1% | 100.0% |
| 1rqgA04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.67 | 56.0 | 4.24e-01 | 92.3% | 55.0% |
| 4hzdB01 | 1.10.3130.10 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 | 0.66 | 55.0 | 4.25e-01 | 89.2% | 63.5% |
| 2ntxA01 | 1.20.58.2010 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1 | 0.64 | 53.0 | 3.81e-01 | 96.9% | 75.2% |
| 6xy4A01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.62 | 51.0 | 4.30e-01 | 96.9% | 54.5% |
| 3t69A02 | 3.30.420.310 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain | 0.60 | 48.0 | 3.40e-01 | 93.8% | 26.5% |
| 1gaxA02 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.60 | 53.0 | 3.56e-01 | 96.9% | 36.1% |
| 4fp4A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.59 | 49.0 | 3.41e-01 | 96.9% | 82.7% |
| 2kj8A00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.58 | 49.0 | 4.12e-01 | 100.0% | 60.2% |
| 2mmbA00 | 4.10.640.20 | Few Secondary Structures › Irregular › 30s Ribosomal Protein S18 › | 0.55 | 50.0 | 4.21e-01 | 100.0% | 67.3% |
| 4oa3A00 | 3.10.310.50 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.53 | 48.0 | 3.69e-01 | 98.5% | 82.3% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3837868 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.91 | 62.0 | 3.68e-01 | 70.8% | 15.7% |
| 3311381 | 109.4.1.2209 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_21, TPR_8, TPR_10, TPR_12 | 0.90 | 63.0 | 4.24e-01 | 72.3% | 22.9% |
| 3645154 | 109.4.1.1315 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_7, TPR_8, TPR_10, TPR_12 | 0.90 | 63.0 | 3.68e-01 | 72.3% | 11.2% |
| 3315458 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.89 | 63.0 | 4.21e-01 | 72.3% | 22.9% |
| 3880516 | 109.4.1.109 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 | 0.89 | 63.0 | 4.11e-01 | 73.8% | 22.2% |
| 3482172 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.84 | 65.0 | 4.22e-01 | 81.5% | 55.3% |
| 3361330 | 109.4.1.1279 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long, TPR_24 | 0.84 | 62.0 | 3.71e-01 | 87.7% | 13.3% |
| 3737384 | 109.4.1.3501 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nro1, Nro1_C | 0.84 | 61.0 | 3.73e-01 | 80.0% | 13.9% |
| 3467149 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.82 | 72.0 | 5.64e-01 | 93.8% | 85.6% |
| 4022885 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.81 | 57.0 | 3.61e-01 | 73.8% | 17.7% |
| 3661756 | 109.4.1.2209 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_21, TPR_8, TPR_10, TPR_12 | 0.78 | 62.0 | 3.77e-01 | 84.6% | 66.1% |
| 3933808 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.78 | 60.0 | 4.13e-01 | 80.0% | 26.7% |
| 3193343 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.78 | 66.0 | 4.70e-01 | 95.4% | 33.1% |
| 3283133 | 610.4.1.0 ↗ | alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain | 0.78 | 69.0 | 5.69e-01 | 95.4% | 86.4% |
| 3682815 | 109.59.1.22 ↗ | alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Glyco_hydro_9 | 0.77 | 64.0 | 4.52e-01 | 87.7% | 31.7% |
| 4931837 | 3843.1.1.28 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MbhD | 0.77 | 53.0 | 5.23e-01 | 72.3% | 81.4% |
| 4326325 | 3579.1.1.6 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › MbhD+MbhE | 0.77 | 52.0 | 3.67e-01 | 70.8% | 29.5% |
| 3243925 | 622.1.1.1 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C | 0.75 | 64.0 | 5.80e-01 | 92.3% | 87.1% |
| 5034342 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.73 | 64.0 | 5.94e-01 | 93.8% | 90.0% |
| 5075876 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.71 | 58.0 | 3.47e-01 | 87.7% | 55.4% |
| 5030918 | 632.11.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF357 | 0.68 | 63.0 | 5.84e-01 | 98.5% | 90.0% |
| 3699643 | 6155.1.1.1 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv | 0.66 | 56.0 | 5.13e-01 | 93.8% | 84.7% |