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SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00208
Bact-VirSR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00208
Identity
- Kingdom:
- phage
Quality
79.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-55
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mzvA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.71 | 63.0 | 3.90e-01 | 100.0% | 18.1% |
| 2b5dX01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.63 | 54.0 | 3.23e-01 | 100.0% | 48.3% |
| 1mhyG02 | 1.20.1280.30 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 | 0.61 | 43.0 | 3.85e-01 | 71.7% | 52.1% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.60 | 50.0 | 4.38e-01 | 94.3% | 86.6% |
| 3mhsB00 | 1.10.246.140 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 | 0.60 | 44.0 | 3.76e-01 | 81.1% | 86.8% |
| 3bbzA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.60 | 45.0 | 4.59e-01 | 100.0% | 97.9% |
| 1lp1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.58 | 44.0 | 4.47e-01 | 98.1% | 90.9% |
| 4b94A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 41.0 | 3.15e-01 | 81.1% | 31.2% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 49.0 | 3.89e-01 | 100.0% | 70.5% |
| 1tvzA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.56 | 44.0 | 3.22e-01 | 84.9% | 57.1% |
| 2elcA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.56 | 42.0 | 3.90e-01 | 84.9% | 64.2% |
| 4cqiA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 50.0 | 3.93e-01 | 100.0% | 93.5% |
| 1x3kA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 41.0 | 3.05e-01 | 81.1% | 63.3% |
| 3s6jE02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 45.0 | 4.08e-01 | 86.8% | 82.6% |
| 8sbeA02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.55 | 45.0 | 3.13e-01 | 94.3% | 96.8% |
| 3nz4B03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.55 | 45.0 | 3.74e-01 | 96.2% | 78.8% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.55 | 43.0 | 4.36e-01 | 98.1% | 98.2% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.55 | 44.0 | 3.48e-01 | 98.1% | 74.2% |
| 2mqaA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.55 | 45.0 | 3.57e-01 | 98.1% | 90.4% |
| 2gutA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.55 | 46.0 | 4.19e-01 | 100.0% | 85.7% |
| 2lpnA00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.55 | 45.0 | 3.76e-01 | 100.0% | 89.5% |
| 2qr6A02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 41.0 | 2.51e-01 | 81.1% | 18.6% |
| 1j09A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.54 | 38.0 | 3.99e-01 | 94.3% | 87.5% |
| 3d6jA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 42.0 | 3.90e-01 | 86.8% | 86.6% |
| 3ilkA02 | 1.10.8.590 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.53 | 46.0 | 4.27e-01 | 100.0% | 79.4% |
| 5wpjB03 | 1.10.8.660 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.53 | 39.0 | 3.93e-01 | 96.2% | 78.8% |
| 1eo0A00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.52 | 41.0 | 3.83e-01 | 98.1% | 68.8% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.52 | 42.0 | 3.72e-01 | 98.1% | 65.9% |
| 7jv7B01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 41.0 | 3.22e-01 | 100.0% | 52.1% |
| 4ye6A01 | 1.10.8.1290 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 | 0.52 | 38.0 | 3.21e-01 | 96.2% | 43.3% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.51 | 40.0 | 3.59e-01 | 98.1% | 61.5% |
| 4ex8A00 | 3.40.1790.10 | Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain | 0.51 | 39.0 | 2.58e-01 | 96.2% | 52.2% |
| 4fcgA00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.51 | 40.0 | 2.66e-01 | 100.0% | 35.5% |
| 2g8kA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 40.0 | 2.99e-01 | 86.8% | 64.0% |
| 2prrA02 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.50 | 41.0 | 3.23e-01 | 96.2% | 80.3% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3738995 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.82 | 72.0 | 6.76e-01 | 100.0% | 87.7% |
| 4015874 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.76 | 52.0 | 3.52e-01 | 71.7% | 45.1% |
| 3553221 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.70 | 59.0 | 4.66e-01 | 100.0% | 64.2% |
| 4095048 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.70 | 59.0 | 4.65e-01 | 100.0% | 64.2% |
| 4115902 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.67 | 42.0 | 4.21e-01 | 88.7% | 61.8% |
| 4452686 | 160.1.1.1 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C | 0.67 | 57.0 | 4.22e-01 | 100.0% | 85.3% |
| 3911689 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 51.0 | 4.44e-01 | 86.8% | 52.9% |
| 4362562 | 148.1.3.337 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF27734 | 0.65 | 44.0 | 3.03e-01 | 71.7% | 44.0% |
| 3501944 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.64 | 54.0 | 3.77e-01 | 100.0% | 89.7% |
| 2507424 | 6091.1.1.1 ↗ | alpha bundles › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › FIVAR | 0.63 | 53.0 | 4.65e-01 | 100.0% | 90.6% |
| 396389 | 632.2.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › B | 0.61 | 45.0 | 4.60e-01 | 98.1% | 84.9% |
| 4945443 | 2004.5.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain | 0.59 | 43.0 | 3.02e-01 | 81.1% | 73.2% |
| 4976690 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 43.0 | 4.46e-01 | 90.6% | 86.0% |
| 3226963 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.55 | 47.0 | 4.45e-01 | 100.0% | 92.3% |
| 4014053 | 148.1.3.216 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF7069 | 0.55 | 44.0 | 3.92e-01 | 90.6% | 62.5% |
| 4020945 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.55 | 44.0 | 3.95e-01 | 88.7% | 65.3% |
| 3276922 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.55 | 40.0 | 4.03e-01 | 79.2% | 85.5% |
| 3734125 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.55 | 48.0 | 2.95e-01 | 100.0% | 46.4% |
| 4968502 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 41.0 | 4.03e-01 | 88.7% | 86.7% |
| 3287294 | 109.4.1.2330 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF31120 | 0.54 | 35.0 | 3.00e-01 | 71.7% | 37.9% |
| 4007832 | 102.1.1.121 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_SMF | 0.52 | 41.0 | 3.89e-01 | 86.8% | 84.6% |
| 4013315 | 148.1.3.216 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF7069 | 0.52 | 44.0 | 3.62e-01 | 96.2% | 53.0% |
| 3704762 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.52 | 43.0 | 3.40e-01 | 98.1% | 64.0% |
| 4076215 | 184.1.1.1 ↗ | alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N | 0.52 | 41.0 | 3.73e-01 | 84.9% | 68.6% |
| 5011341 | 4049.1.1.0 ↗ | alpha superhelices › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like | 0.52 | 43.0 | 4.19e-01 | 96.2% | 95.0% |
| 3286911 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 35.0 | 3.21e-01 | 77.4% | 55.7% |