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SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00227
Bact-VirSR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00227
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 44-104
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2z16B01 | 1.20.91.10 | Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Influenza matrix M1, N-terminal subdomain 1 | 0.76 | 48.0 | 4.40e-01 | 70.5% | 50.0% |
| 2lqxA00 | 6.10.250.1700 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.72 | 47.0 | 5.39e-01 | 100.0% | 100.0% |
| 1oksA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.62 | 41.0 | 4.36e-01 | 72.1% | 77.4% |
| 5y6qB02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.59 | 40.0 | 3.44e-01 | 73.8% | 41.5% |
| 2py6A01 | 1.20.1270.160 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.59 | 42.0 | 3.94e-01 | 86.9% | 61.6% |
| 1ywqA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.59 | 45.0 | 3.20e-01 | 85.2% | 84.9% |
| 4qjvA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.55 | 37.0 | 3.35e-01 | 70.5% | 70.8% |
| 3ffhA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 38.0 | 2.98e-01 | 73.8% | 87.9% |
| 6gmhK00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.54 | 39.0 | 3.22e-01 | 77.0% | 73.0% |
| 5xogK00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.54 | 38.0 | 3.21e-01 | 77.0% | 74.3% |
| 5yjwA00 | 3.50.50.100 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › | 0.54 | 44.0 | 2.68e-01 | 93.4% | 89.2% |
| 3qszA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 44.0 | 3.33e-01 | 100.0% | 89.8% |
| 1uqwA03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.54 | 42.0 | 2.95e-01 | 90.2% | 91.1% |
| 2nscA01 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.53 | 46.0 | 4.30e-01 | 98.4% | 98.7% |
| 4d4iA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.53 | 43.0 | 2.75e-01 | 100.0% | 79.0% |
| 3njcA00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.53 | 39.0 | 2.89e-01 | 77.0% | 84.3% |
| 3tu3A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.53 | 37.0 | 2.97e-01 | 72.1% | 76.5% |
| 2pcsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 41.0 | 3.16e-01 | 88.5% | 92.1% |
| 3l4jA04 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.52 | 43.0 | 3.71e-01 | 95.1% | 98.0% |
| 3cq4A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 35.0 | 2.76e-01 | 70.5% | 55.5% |
| 2lmcB00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.51 | 31.0 | 3.17e-01 | 98.4% | 59.0% |
| 1sbkA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 43.0 | 3.43e-01 | 98.4% | 97.8% |
| 3aqoA02 | 3.30.1360.200 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.51 | 43.0 | 3.39e-01 | 98.4% | 53.9% |
| 3qx3B03 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.51 | 41.0 | 3.64e-01 | 96.7% | 99.0% |
| 1xppD00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.51 | 39.0 | 3.27e-01 | 82.0% | 77.2% |
| 1omsA00 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.50 | 40.0 | 3.47e-01 | 98.4% | 73.7% |
| 3mahA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.50 | 40.0 | 3.85e-01 | 88.5% | 100.0% |
| 3u97A00 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.50 | 32.0 | 3.06e-01 | 100.0% | 51.9% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3586672 | 6050.1.1.0 ↗ | a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone | 0.76 | 68.0 | 5.65e-01 | 100.0% | 61.9% |
| 4537543 | 3103.1.1.4 ↗ | alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Phage_TAC_9 | 0.64 | 54.0 | 4.41e-01 | 100.0% | 70.4% |
| 4079870 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.64 | 53.0 | 3.36e-01 | 98.4% | 19.7% |
| 3717300 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.63 | 54.0 | 3.24e-01 | 100.0% | 27.7% |
| 4347463 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.63 | 53.0 | 4.37e-01 | 96.7% | 74.8% |
| 4612721 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.61 | 51.0 | 4.20e-01 | 98.4% | 71.7% |
| 3867718 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.60 | 49.0 | 3.76e-01 | 86.9% | 65.9% |
| 4611583 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.59 | 49.0 | 4.06e-01 | 98.4% | 69.2% |
| 3383505 | 2006.1.3.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOP6A-Spo11_Toprim | 0.58 | 47.0 | 3.43e-01 | 90.2% | 34.3% |
| 4525468 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.58 | 48.0 | 4.11e-01 | 98.4% | 78.2% |
| 3789158 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.57 | 47.0 | 3.23e-01 | 98.4% | 83.4% |
| 4271696 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.57 | 47.0 | 3.83e-01 | 98.4% | 68.5% |
| 4129894 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.57 | 47.0 | 3.93e-01 | 96.7% | 75.7% |
| 4266765 | 4014.1.1.1 ↗ | a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV | 0.56 | 45.0 | 3.45e-01 | 95.1% | 87.9% |
| 3295074 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.56 | 45.0 | 3.66e-01 | 96.7% | 64.3% |
| 4326223 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.55 | 44.0 | 3.70e-01 | 95.1% | 88.3% |
| 4399355 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.55 | 46.0 | 3.79e-01 | 100.0% | 71.2% |
| 4997140 | 873.1.1.11 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27343 | 0.55 | 39.0 | 3.11e-01 | 100.0% | 33.1% |
| 3719735 | 4014.1.1.1 ↗ | a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV | 0.55 | 45.0 | 3.39e-01 | 95.1% | 58.8% |
| 4442872 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.55 | 46.0 | 3.87e-01 | 100.0% | 77.4% |
| 4599972 | 306.7.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain | 0.55 | 45.0 | 3.76e-01 | 95.1% | 72.2% |
| 3989547 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.54 | 45.0 | 3.70e-01 | 98.4% | 69.6% |
| 3718978 | 1.1.8.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 | 0.54 | 42.0 | 3.33e-01 | 88.5% | 44.4% |
| 4431976 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.54 | 44.0 | 3.75e-01 | 96.7% | 73.0% |
| 5067598 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.54 | 43.0 | 3.30e-01 | 100.0% | 36.1% |
| 3342267 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.54 | 42.0 | 3.05e-01 | 86.9% | 71.1% |
| 4457756 | 4337.1.1.1 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › MutL_C | 0.53 | 43.0 | 3.64e-01 | 96.7% | 84.1% |
| 5073740 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.52 | 43.0 | 3.13e-01 | 100.0% | 29.5% |
| 4597953 | 4337.1.1.0 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain | 0.52 | 42.0 | 3.56e-01 | 95.1% | 77.4% |
| 4338725 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.52 | 42.0 | 3.53e-01 | 95.1% | 73.0% |
| 4447560 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.52 | 42.0 | 3.67e-01 | 98.4% | 62.9% |
| 3292735 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.52 | 41.0 | 3.39e-01 | 95.1% | 63.7% |
| 4371213 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.52 | 43.0 | 3.79e-01 | 100.0% | 64.0% |
| 3864174 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.52 | 37.0 | 2.48e-01 | 77.0% | 36.2% |
| 4549996 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.52 | 36.0 | 2.81e-01 | 75.4% | 73.2% |
| 4048823 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.51 | 40.0 | 3.65e-01 | 95.1% | 67.4% |
| 4973108 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.51 | 34.0 | 3.31e-01 | 70.5% | 68.6% |
| 4985486 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.51 | 40.0 | 2.99e-01 | 100.0% | 32.5% |
| 3445077 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 39.0 | 3.55e-01 | 85.2% | 98.8% |
| 4952787 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.50 | 41.0 | 3.49e-01 | 95.1% | 56.4% |