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SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00236
Bact-VirSR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00236
Identity
- Kingdom:
- phage
Quality
94.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-110
Domain cluster:
rep: IMGVR_UViG_3300005099_000006-3300005099-Ga0072682_10189715__D13-127
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 31.0 | 3.97e-01 | 97.2% | 83.3% |
| 3eb8B01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.57 | 28.0 | 3.61e-01 | 91.7% | 82.0% |
| 3wa2X01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 40.0 | 4.39e-01 | 100.0% | 90.8% |
| 4bhrA00 | 3.30.1300.70 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.56 | 36.0 | 4.16e-01 | 98.2% | 88.9% |
| 3nqzA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 39.0 | 4.42e-01 | 100.0% | 95.2% |
| 1e2rA02 | 2.140.10.20 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 0.52 | 46.0 | 3.12e-01 | 100.0% | 31.0% |
| 3ec7A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 35.0 | 3.44e-01 | 100.0% | 63.1% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 28.0 | 3.32e-01 | 72.5% | 83.3% |
| 1vzyA01 | 3.55.30.10 | Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain | 0.51 | 42.0 | 3.32e-01 | 100.0% | 42.3% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4946341 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.74 | 48.0 | 3.61e-01 | 99.1% | 29.0% |
| 5012842 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.61 | 43.0 | 4.74e-01 | 100.0% | 92.9% |
| 4025460 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 46.0 | 3.32e-01 | 100.0% | 27.7% |
| 3438528 | 5.1.4.506 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_AT5G49610-like | 0.60 | 48.0 | 3.38e-01 | 85.3% | 39.7% |
| 3582298 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 51.0 | 3.33e-01 | 93.6% | 39.6% |
| 3717097 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.59 | 47.0 | 3.08e-01 | 87.2% | 38.2% |
| 3393142 | 5.1.3.11 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MRJP | 0.58 | 49.0 | 3.37e-01 | 93.6% | 37.5% |
| 3250914 | 5.1.4.38 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 | 0.58 | 45.0 | 3.07e-01 | 100.0% | 22.8% |
| 3616221 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 40.0 | 3.46e-01 | 71.6% | 48.5% |
| 3338126 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.57 | 45.0 | 3.48e-01 | 100.0% | 36.9% |
| 4973793 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.56 | 38.0 | 4.18e-01 | 99.1% | 84.4% |
| 4613375 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.55 | 38.0 | 3.16e-01 | 72.5% | 73.7% |
| 3748272 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.54 | 46.0 | 2.98e-01 | 91.7% | 32.7% |
| 3396976 | 5.1.3.11 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MRJP | 0.54 | 45.0 | 3.11e-01 | 92.7% | 35.9% |
| 3869205 | 5.1.4.31 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lgl_C | 0.54 | 46.0 | 3.09e-01 | 95.4% | 38.9% |
| 5053966 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.54 | 33.0 | 3.62e-01 | 98.2% | 76.5% |
| 3440332 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 47.0 | 3.16e-01 | 93.6% | 37.7% |
| 3407288 | 5.1.4.433 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › HPS3_N | 0.54 | 47.0 | 3.18e-01 | 99.1% | 34.7% |
| 3682604 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.53 | 46.0 | 2.75e-01 | 93.6% | 15.8% |
| 3608325 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.53 | 47.0 | 3.19e-01 | 100.0% | 40.5% |
| 4157696 | 10.1.1.26 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C | 0.53 | 40.0 | 3.38e-01 | 93.6% | 47.8% |
| 3678765 | 11.8.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like | 0.53 | 40.0 | 4.01e-01 | 99.1% | 77.4% |
| 3938022 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 46.0 | 3.21e-01 | 98.2% | 39.5% |
| 3460513 | 10.1.1.26 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C | 0.52 | 41.0 | 3.30e-01 | 93.6% | 42.8% |
| 3410261 | 5.1.4.116 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 | 0.52 | 41.0 | 3.22e-01 | 86.2% | 53.5% |
| 3829679 | 5.1.4.224 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 | 0.51 | 43.0 | 3.00e-01 | 94.5% | 28.4% |
| 4083856 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 44.0 | 2.94e-01 | 93.6% | 28.0% |
| 3260465 | 219.1.1.6 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 | 0.51 | 45.0 | 3.29e-01 | 98.2% | 80.3% |
| 3601640 | 511.1.1.0 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain | 0.51 | 42.0 | 3.64e-01 | 92.7% | 81.7% |
| 4559431 | 331.22.1.2 ↗ | a+b two layers › TBP-like › Outer membrane protein assembly factor BamC › Outer membrane protein assembly factor BamC › PF29358 | 0.51 | 36.0 | 2.84e-01 | 73.4% | 39.1% |
| 3587399 | 331.1.1.2 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Rep_trans | 0.50 | 38.0 | 3.35e-01 | 98.2% | 53.3% |