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SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00237
Bact-VirSR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00237
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-146
Domain cluster:
rep: IMGVR_UViG_3300035436_000274-3300035436-Ga0394079_23898_6304_6885__D42-192
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1l9mA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 36.0 | 4.18e-01 | 98.6% | 73.2% |
| 4en2A02 | 2.60.40.1170 | Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B | 0.63 | 39.0 | 4.49e-01 | 97.2% | 84.6% |
| 4llfD01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 50.0 | 4.63e-01 | 88.8% | 79.2% |
| 4fx5A01 | 2.60.40.3670 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 40.0 | 4.09e-01 | 100.0% | 69.0% |
| 6sk6A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 48.0 | 3.93e-01 | 88.8% | 58.6% |
| 1cwpA00 | 2.60.120.220 | Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain | 0.59 | 44.0 | 4.35e-01 | 95.8% | 74.5% |
| 4ofqA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 49.0 | 4.79e-01 | 98.6% | 84.5% |
| 2luwA00 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 37.0 | 4.22e-01 | 95.8% | 91.1% |
| 4madA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.57 | 40.0 | 4.11e-01 | 95.8% | 76.1% |
| 5lxvA01 | 2.60.40.680 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 44.0 | 4.18e-01 | 100.0% | 69.6% |
| 1sfpA00 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.56 | 38.0 | 4.20e-01 | 98.6% | 88.3% |
| 1f15B00 | 2.60.120.530 | Mainly Beta › Sandwich › Jelly Rolls › Cucumovirus coat protein, subunit A | 0.56 | 45.0 | 4.11e-01 | 96.5% | 64.7% |
| 5j7mA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 41.0 | 4.40e-01 | 95.1% | 91.8% |
| 4es8B01 | 2.60.120.1240 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 49.0 | 4.43e-01 | 100.0% | 90.8% |
| 2x12A01 | 2.60.40.2010 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 43.0 | 3.93e-01 | 83.2% | 71.1% |
| 3qs2A00 | 2.60.40.3290 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial protein EcpA | 0.54 | 49.0 | 4.59e-01 | 98.6% | 87.3% |
| 2y7lA02 | 2.60.40.2430 | Mainly Beta › Sandwich › Immunoglobulin-like › Agglutinin-like protein, N-terminal domain, N2 subdomain | 0.54 | 38.0 | 3.77e-01 | 100.0% | 68.9% |
| 2id4A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 40.0 | 4.14e-01 | 100.0% | 82.6% |
| 2zahA02 | 2.60.40.4030 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 33.0 | 3.46e-01 | 96.5% | 67.2% |
| 1jhjA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 42.0 | 4.11e-01 | 97.9% | 75.2% |
| 3f8uB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 37.0 | 3.90e-01 | 99.3% | 80.2% |
| 2vqaA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 38.0 | 3.53e-01 | 88.8% | 59.3% |
| 1jmmA02 | 2.60.530.10 | Mainly Beta › Sandwich › Major cell-surface adhesin PAc › Major cell-surface adhesin PAc | 0.52 | 48.0 | 3.62e-01 | 100.0% | 56.1% |
| 6gh3A01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.52 | 47.0 | 3.64e-01 | 100.0% | 71.6% |
| 1p8jA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 38.0 | 3.99e-01 | 100.0% | 84.1% |
| 2c9aA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 47.0 | 4.57e-01 | 100.0% | 91.4% |
| 3cwzB03 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.52 | 34.0 | 3.67e-01 | 96.5% | 78.5% |
| 6l9iA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 37.0 | 3.49e-01 | 93.0% | 59.4% |
| 6mnjA01 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 44.0 | 4.29e-01 | 99.3% | 85.2% |
| 5a3lA00 | 2.60.120.1560 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 44.0 | 3.87e-01 | 93.0% | 78.9% |
| 1novA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 46.0 | 3.59e-01 | 100.0% | 69.3% |
| 3es4A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 37.0 | 4.08e-01 | 95.8% | 94.8% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3654926 | 11.1.1.235 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3_6 | 0.65 | 42.0 | 4.52e-01 | 95.1% | 75.2% |
| 3788235 | 11.1.5.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub | 0.65 | 42.0 | 4.65e-01 | 100.0% | 83.6% |
| 4954927 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.65 | 43.0 | 4.26e-01 | 100.0% | 62.6% |
| 3701186 | 11.1.5.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub | 0.65 | 42.0 | 4.57e-01 | 100.0% | 80.0% |
| 3715744 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.63 | 41.0 | 4.55e-01 | 99.3% | 84.5% |
| 4177877 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.61 | 52.0 | 5.06e-01 | 100.0% | 83.9% |
| 4929326 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 44.0 | 4.46e-01 | 98.6% | 76.3% |
| 3911511 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.61 | 40.0 | 4.51e-01 | 99.3% | 89.5% |
| 4935032 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.60 | 39.0 | 4.36e-01 | 97.2% | 83.6% |
| 2589532 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.59 | 49.0 | 4.44e-01 | 88.8% | 78.9% |
| 4944189 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.59 | 45.0 | 3.93e-01 | 100.0% | 53.0% |
| 3194400 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 48.0 | 4.62e-01 | 100.0% | 78.1% |
| 3491699 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 46.0 | 4.54e-01 | 100.0% | 78.7% |
| 5006270 | 10.48.1.0 ↗ | beta sandwiches › jelly-roll › Camelysin metallo-endopeptidase-like › Camelysin metallo-endopeptidase-like | 0.58 | 51.0 | 4.82e-01 | 100.0% | 80.6% |
| 4007499 | 11.1.5.58 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF1120 | 0.57 | 52.0 | 4.50e-01 | 100.0% | 85.7% |
| 5034825 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.57 | 45.0 | 4.62e-01 | 100.0% | 88.1% |
| 5022769 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.57 | 43.0 | 4.69e-01 | 100.0% | 100.0% |
| 4008238 | 11.1.5.58 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF1120 | 0.57 | 52.0 | 4.54e-01 | 100.0% | 85.9% |
| 5040751 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.57 | 38.0 | 4.21e-01 | 97.2% | 88.2% |
| 3914412 | 10.2.1.31 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin | 0.56 | 35.0 | 3.94e-01 | 96.5% | 81.8% |
| 1144823 | 11.1.5.26 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CblD | 0.55 | 49.0 | 4.58e-01 | 100.0% | 78.5% |
| 3600073 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 44.0 | 4.72e-01 | 100.0% | 96.8% |
| 3267685 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.55 | 41.0 | 4.40e-01 | 95.1% | 91.2% |
| 3571103 | 4081.1.1.8 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT_2 | 0.55 | 41.0 | 3.59e-01 | 100.0% | 52.1% |
| 4004565 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.54 | 49.0 | 4.18e-01 | 100.0% | 80.0% |
| 2644349 | 12.4.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › V-region of surface antigen I/II (SA I/II, PAC) › V-region of surface antigen I/II (SA I/II, PAC) | 0.53 | 48.0 | 3.46e-01 | 100.0% | 46.8% |
| 4351448 | 12.4.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › V-region of surface antigen I/II (SA I/II, PAC) › V-region of surface antigen I/II (SA I/II, PAC) | 0.52 | 47.0 | 3.16e-01 | 100.0% | 32.4% |
| 3917463 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 47.0 | 4.07e-01 | 100.0% | 67.6% |
| 3185703 | 12.1.1.29 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_30C | 0.52 | 31.0 | 3.68e-01 | 94.4% | 92.2% |
| 4942248 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 40.0 | 4.03e-01 | 100.0% | 82.1% |
| 3665189 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 41.0 | 3.71e-01 | 86.7% | 86.0% |
| 3544717 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 40.0 | 4.04e-01 | 100.0% | 83.4% |