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SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00278
Bact-VirSR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00278
Identity
- Kingdom:
- phage
Quality
47.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-68
D2
high
residues 119-250
D3
high
residues 258-355
Domain cluster:
rep: js4906-29-5_S40_scaffold_13_prodigal-single.1__X__X__00046__D3-97
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wfxA02 | 3.20.170.30 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › | 0.88 | 76.0 | 7.92e-01 | 99.0% | 97.8% |
| 2o0pA00 | 3.20.170.20 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Protein of unknown function DUF952 | 0.79 | 74.0 | 6.97e-01 | 100.0% | 86.0% |
| 2x5yA00 | 3.90.228.10 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.75 | 70.0 | 5.73e-01 | 100.0% | 64.9% |
| 1gs0A02 | 3.90.228.10 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.75 | 69.0 | 5.24e-01 | 100.0% | 70.7% |
| 3b82B00 | 3.90.175.10 | Alpha Beta › Alpha-Beta Complex › Diphtheria Toxin; domain 1 › Diphtheria Toxin, domain 1 | 0.74 | 67.0 | 5.22e-01 | 100.0% | 66.7% |
| 4gv2A02 | 3.90.228.10 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.73 | 68.0 | 5.19e-01 | 100.0% | 72.4% |
| 2hw2A00 | 3.20.170.40 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Rifampin ADP-ribosyltransferase domain | 0.70 | 64.0 | 5.70e-01 | 100.0% | 73.2% |
| 4eyyQ02 | 3.20.170.50 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Dot/Icm secretion system IcmQ, C-terminal domain | 0.64 | 58.0 | 5.50e-01 | 100.0% | 86.8% |
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.60 | 41.0 | 4.04e-01 | 100.0% | 63.9% |
| 5mz2I00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.59 | 42.0 | 3.72e-01 | 100.0% | 51.1% |
| 7rxpA01 | 2.20.100.10 | Mainly Beta › Single Sheet › TSP-1 type 1 repeat › Thrombospondin type-1 (TSP1) repeat | 0.55 | 33.0 | 3.87e-01 | 91.8% | 96.6% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3106804 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.88 | 76.0 | 7.52e-01 | 100.0% | 86.4% |
| 4296568 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.88 | 75.0 | 7.69e-01 | 100.0% | 92.6% |
| 4546240 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.87 | 73.0 | 7.66e-01 | 98.0% | 95.6% |
| 4679144 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.87 | 74.0 | 7.50e-01 | 99.0% | 91.6% |
| 5008044 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.86 | 75.0 | 7.62e-01 | 100.0% | 93.7% |
| 4622968 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.86 | 71.0 | 7.41e-01 | 96.9% | 93.3% |
| 5061730 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.86 | 71.0 | 7.44e-01 | 96.9% | 94.4% |
| 4125268 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.86 | 72.0 | 7.50e-01 | 98.0% | 95.6% |
| 5077692 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.86 | 76.0 | 7.47e-01 | 100.0% | 87.6% |
| 4303698 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.85 | 72.0 | 7.34e-01 | 98.0% | 91.5% |
| 4994805 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.84 | 73.0 | 7.17e-01 | 100.0% | 86.4% |
| 5060086 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.84 | 71.0 | 7.26e-01 | 99.0% | 92.6% |
| 3953513 | 237.1.1.9 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › DUF952 | 0.81 | 75.0 | 7.11e-01 | 100.0% | 87.0% |
| 3905755 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.79 | 74.0 | 6.62e-01 | 100.0% | 97.7% |
| 7450 | 237.1.1.9 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › DUF952 | 0.79 | 74.0 | 6.99e-01 | 100.0% | 86.7% |
| 3344114 | 237.1.1.9 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › DUF952 | 0.79 | 73.0 | 6.80e-01 | 100.0% | 87.5% |
| 3631884 | 237.1.1.36 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › DUF7587 | 0.77 | 71.0 | 5.96e-01 | 100.0% | 98.1% |
| 3555152 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.76 | 71.0 | 5.63e-01 | 100.0% | 67.0% |
| 3463182 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.76 | 71.0 | 5.45e-01 | 100.0% | 52.0% |
| 3879371 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.75 | 71.0 | 5.65e-01 | 100.0% | 65.0% |
| 3638034 | 237.1.1.36 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › DUF7587 | 0.75 | 70.0 | 6.06e-01 | 100.0% | 95.9% |
| 4013919 | 237.1.1.9 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › DUF952 | 0.75 | 68.0 | 6.55e-01 | 100.0% | 88.2% |
| 3256269 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.73 | 68.0 | 6.67e-01 | 100.0% | 95.2% |
| 2491400 | 237.1.1.11 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › RES | 0.69 | 63.0 | 5.53e-01 | 100.0% | 95.2% |
| 4995698 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.65 | 59.0 | 5.89e-01 | 99.0% | 100.0% |
| 3193504 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.61 | 55.0 | 4.87e-01 | 100.0% | 92.9% |
| 3807329 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 45.0 | 4.24e-01 | 100.0% | 71.7% |
D4
medium
residues 362-500