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SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00310
Bact-VirSR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00310
Identity
- Kingdom:
- phage
Quality
55.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 928-1000
Domain cluster:
representative
CATH (63)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2l48A00 | 3.30.70.2030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 49.0 | 4.69e-01 | 95.9% | 69.4% |
| 3pxpA02 | 3.30.450.180 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.65 | 58.0 | 4.24e-01 | 100.0% | 87.9% |
| 1q5yC00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.64 | 51.0 | 4.93e-01 | 100.0% | 79.3% |
| 2nrqA00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.62 | 54.0 | 4.47e-01 | 100.0% | 73.7% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.62 | 48.0 | 4.67e-01 | 95.9% | 75.6% |
| 2ogkD00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.62 | 54.0 | 4.40e-01 | 100.0% | 73.2% |
| 2bj3D02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.61 | 47.0 | 4.63e-01 | 100.0% | 77.8% |
| 3d3bJ00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.61 | 49.0 | 4.69e-01 | 100.0% | 77.0% |
| 3fk5A02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.60 | 41.0 | 3.34e-01 | 71.2% | 97.1% |
| 2khdA00 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 50.0 | 4.48e-01 | 97.3% | 65.7% |
| 3nynA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.59 | 41.0 | 3.29e-01 | 74.0% | 36.7% |
| 3k59A02 | 3.30.70.2250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif | 0.59 | 43.0 | 4.47e-01 | 100.0% | 89.6% |
| 3nynB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.59 | 42.0 | 2.85e-01 | 75.3% | 34.1% |
| 2dt9A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 46.0 | 4.58e-01 | 100.0% | 84.8% |
| 4ushA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 45.0 | 4.12e-01 | 100.0% | 62.1% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 44.0 | 4.19e-01 | 100.0% | 70.0% |
| 3go9A02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.58 | 49.0 | 3.62e-01 | 100.0% | 42.4% |
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 46.0 | 4.46e-01 | 100.0% | 79.8% |
| 4fr4D01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 40.0 | 3.37e-01 | 74.0% | 41.9% |
| 6lpnA04 | 3.30.70.2740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 48.0 | 4.48e-01 | 100.0% | 73.7% |
| 2k3iA01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 48.0 | 4.62e-01 | 100.0% | 84.7% |
| 3rrkA03 | 3.30.70.2750 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 43.0 | 4.33e-01 | 94.5% | 82.4% |
| 3pg1A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 42.0 | 3.51e-01 | 79.5% | 50.4% |
| 1u8sA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 45.0 | 4.39e-01 | 100.0% | 76.7% |
| 3wx4A00 | 3.30.70.2770 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 49.0 | 4.50e-01 | 100.0% | 79.6% |
| 4dmzA02 | 3.30.70.2880 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 48.0 | 3.99e-01 | 100.0% | 54.0% |
| 3ibwA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 43.0 | 4.22e-01 | 100.0% | 81.0% |
| 6le1A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 45.0 | 4.63e-01 | 98.6% | 100.0% |
| 3c19A01 | 3.30.70.1380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transcriptional regulatory protein pf0864 domain like | 0.55 | 47.0 | 4.28e-01 | 98.6% | 71.7% |
| 2n8lA00 | 3.30.310.210 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.55 | 44.0 | 3.44e-01 | 100.0% | 36.6% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 44.0 | 4.01e-01 | 100.0% | 64.4% |
| 1yz7A02 | 3.30.70.1130 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha | 0.55 | 47.0 | 4.45e-01 | 100.0% | 83.3% |
| 3uc4A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 36.0 | 3.47e-01 | 72.6% | 58.8% |
| 3luyA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 43.0 | 4.14e-01 | 100.0% | 78.7% |
| 2yweA03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.54 | 43.0 | 4.22e-01 | 100.0% | 81.7% |
| 3d7aA01 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.54 | 45.0 | 3.78e-01 | 98.6% | 72.8% |
| 2uvaG03 | 3.30.70.3320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 46.0 | 4.10e-01 | 100.0% | 74.1% |
| 3r0aA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 38.0 | 3.35e-01 | 78.1% | 48.3% |
| 3s3lA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.53 | 37.0 | 2.98e-01 | 74.0% | 98.7% |
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.53 | 44.0 | 3.90e-01 | 100.0% | 72.9% |
| 1q8kA03 | 3.30.70.1130 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha | 0.53 | 45.0 | 3.98e-01 | 100.0% | 62.9% |
| 2rrnA01 | 3.30.70.2040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 42.0 | 4.13e-01 | 100.0% | 80.7% |
| 2ahoB03 | 3.30.70.1130 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha | 0.53 | 45.0 | 4.32e-01 | 100.0% | 89.8% |
| 3bguA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 44.0 | 4.15e-01 | 98.6% | 85.4% |
| 4dn9B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 44.0 | 4.10e-01 | 100.0% | 74.2% |
| 2anrA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.53 | 42.0 | 4.19e-01 | 100.0% | 90.7% |
| 3pm9A04 | 3.30.70.2740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 45.0 | 4.32e-01 | 100.0% | 87.4% |
| 3o6qA02 | 3.30.70.2720 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 41.0 | 3.65e-01 | 89.0% | 92.1% |
| 2nwuB01 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.52 | 44.0 | 3.80e-01 | 100.0% | 71.4% |
| 2lu1A00 | 3.30.70.2370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 45.0 | 4.25e-01 | 100.0% | 95.5% |
| 1iujA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 44.0 | 4.02e-01 | 100.0% | 76.5% |
| 4lrjA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 33.0 | 3.38e-01 | 71.2% | 64.4% |
| 4qjvB00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.52 | 43.0 | 4.03e-01 | 100.0% | 74.5% |
| 2nyiA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 40.0 | 3.96e-01 | 98.6% | 80.2% |
| 2if1A00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.52 | 40.0 | 3.43e-01 | 98.6% | 50.0% |
| 1lq9A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 43.0 | 3.84e-01 | 100.0% | 67.9% |
| 6ruiK00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.51 | 41.0 | 3.78e-01 | 100.0% | 66.0% |
| 2joeA01 | 3.30.1830.10 | Alpha Beta › 2-Layer Sandwich › YehR-like fold › YehR-like | 0.51 | 41.0 | 3.55e-01 | 94.5% | 56.2% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.51 | 43.0 | 4.02e-01 | 100.0% | 85.4% |
| 1sqeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 41.0 | 3.75e-01 | 93.2% | 72.3% |
| 6l3tA01 | 1.20.1440.80 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain | 0.51 | 44.0 | 3.28e-01 | 100.0% | 59.8% |
| 2j3tC00 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.50 | 39.0 | 3.20e-01 | 84.9% | 100.0% |
| 5ixuA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 41.0 | 3.82e-01 | 100.0% | 76.5% |
ECOD (86)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5581 | 306.8.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › TM1457-like › TM1457-like › Peptidase_Prp | 0.67 | 60.0 | 5.21e-01 | 100.0% | 72.3% |
| 4996908 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.66 | 52.0 | 5.00e-01 | 100.0% | 73.9% |
| 5081333 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.63 | 48.0 | 4.81e-01 | 100.0% | 82.7% |
| 3329735 | 327.11.2.37 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_DEAH11_1st | 0.61 | 50.0 | 5.09e-01 | 98.6% | 95.7% |
| 4983137 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.61 | 51.0 | 4.28e-01 | 97.3% | 80.0% |
| 3726634 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.59 | 47.0 | 4.64e-01 | 100.0% | 83.7% |
| 4176189 | 304.52.1.1 ↗ | a+b two layers › Alpha-beta plaits › YbeD/HP0495-like › YbeD/HP0495-like › DUF493 | 0.59 | 47.0 | 4.54e-01 | 100.0% | 80.0% |
| 4034527 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 45.0 | 4.49e-01 | 100.0% | 82.1% |
| 4995222 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.58 | 46.0 | 4.59e-01 | 94.5% | 86.7% |
| 4947614 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.58 | 46.0 | 4.33e-01 | 98.6% | 72.2% |
| 5050897 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.58 | 46.0 | 4.41e-01 | 98.6% | 76.5% |
| 4928355 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.57 | 49.0 | 4.20e-01 | 100.0% | 84.0% |
| 4184306 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.57 | 44.0 | 4.22e-01 | 94.5% | 71.1% |
| 4039920 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.57 | 44.0 | 4.22e-01 | 94.5% | 71.1% |
| 4664239 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.57 | 45.0 | 4.23e-01 | 94.5% | 71.1% |
| 4967300 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.57 | 45.0 | 4.34e-01 | 98.6% | 76.5% |
| 5072239 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.57 | 47.0 | 4.49e-01 | 100.0% | 78.9% |
| 5051545 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.57 | 49.0 | 4.84e-01 | 100.0% | 92.5% |
| 3544696 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.57 | 47.0 | 4.19e-01 | 100.0% | 63.6% |
| 4116209 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.57 | 45.0 | 4.26e-01 | 98.6% | 72.2% |
| 4950495 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.57 | 44.0 | 4.33e-01 | 98.6% | 81.2% |
| 3613200 | 304.134.1.0 ↗ | a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like | 0.57 | 48.0 | 4.59e-01 | 100.0% | 83.3% |
| 4201490 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.57 | 44.0 | 4.16e-01 | 93.2% | 70.0% |
| 4951741 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.57 | 45.0 | 4.24e-01 | 98.6% | 72.2% |
| 4998201 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.56 | 48.0 | 4.62e-01 | 100.0% | 85.9% |
| 3924669 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 49.0 | 4.53e-01 | 100.0% | 86.3% |
| 4182456 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.56 | 47.0 | 4.57e-01 | 98.6% | 91.8% |
| 3959456 | 5067.1.1.4 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL | 0.56 | 47.0 | 3.09e-01 | 100.0% | 21.1% |
| 5052894 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.56 | 48.0 | 4.53e-01 | 100.0% | 81.7% |
| 4030911 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.56 | 44.0 | 4.30e-01 | 100.0% | 81.0% |
| 4195932 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.55 | 46.0 | 2.98e-01 | 94.5% | 22.4% |
| 5048109 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.55 | 48.0 | 4.53e-01 | 100.0% | 81.1% |
| 4994641 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.55 | 48.0 | 4.44e-01 | 100.0% | 81.1% |
| 4946218 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.55 | 44.0 | 4.01e-01 | 100.0% | 64.8% |
| 5042071 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.55 | 45.0 | 4.32e-01 | 100.0% | 81.2% |
| 4974688 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.55 | 45.0 | 4.60e-01 | 100.0% | 98.6% |
| 3256186 | 206.1.1.72 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal | 0.54 | 45.0 | 3.01e-01 | 94.5% | 24.8% |
| 4571276 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.54 | 45.0 | 4.46e-01 | 98.6% | 86.3% |
| 3929061 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.54 | 46.0 | 4.33e-01 | 100.0% | 84.2% |
| 3802360 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.54 | 46.0 | 4.08e-01 | 100.0% | 65.2% |
| 3797452 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 45.0 | 3.81e-01 | 100.0% | 55.0% |
| 4983053 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.54 | 47.0 | 4.49e-01 | 100.0% | 87.1% |
| 4954138 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.54 | 44.0 | 4.24e-01 | 100.0% | 80.0% |
| 4502232 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.54 | 45.0 | 4.41e-01 | 100.0% | 90.0% |
| 5020004 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.54 | 42.0 | 4.23e-01 | 98.6% | 86.7% |
| 3584599 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.54 | 47.0 | 4.15e-01 | 100.0% | 66.4% |
| 4388283 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.54 | 43.0 | 4.36e-01 | 98.6% | 94.3% |
| 4385553 | 304.48.1.48 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_2 | 0.54 | 47.0 | 3.68e-01 | 100.0% | 45.5% |
| 4669919 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.54 | 46.0 | 4.47e-01 | 100.0% | 85.9% |
| 5065478 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.53 | 46.0 | 4.42e-01 | 100.0% | 84.1% |
| 4297519 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.53 | 43.0 | 4.39e-01 | 100.0% | 97.3% |
| 5053097 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.53 | 45.0 | 4.21e-01 | 100.0% | 77.9% |
| 4943788 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.53 | 46.0 | 4.49e-01 | 100.0% | 91.3% |
| 5027876 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.53 | 46.0 | 4.47e-01 | 100.0% | 90.0% |
| 3956508 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.53 | 43.0 | 4.25e-01 | 98.6% | 86.3% |
| 5036213 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.53 | 43.0 | 4.08e-01 | 100.0% | 74.4% |
| 1146572 | 304.152.1.1 ↗ | a+b two layers › Alpha-beta plaits › E4-ORF3 › E4-ORF3 › Adeno_E4_ORF3 | 0.53 | 44.0 | 3.92e-01 | 100.0% | 74.1% |
| 5040160 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.53 | 43.0 | 3.96e-01 | 100.0% | 68.0% |
| 5031564 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.53 | 46.0 | 4.28e-01 | 100.0% | 79.6% |
| 3710027 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 39.0 | 3.31e-01 | 98.6% | 46.8% |
| 3488012 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.53 | 42.0 | 2.96e-01 | 94.5% | 26.8% |
| 5027042 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.53 | 44.0 | 4.25e-01 | 100.0% | 81.8% |
| 4933794 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.53 | 43.0 | 4.28e-01 | 100.0% | 87.5% |
| 3798288 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.53 | 44.0 | 3.04e-01 | 98.6% | 43.4% |
| 3723378 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.53 | 45.0 | 4.31e-01 | 100.0% | 84.7% |
| 3937461 | 304.151.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase | 0.53 | 44.0 | 3.97e-01 | 100.0% | 74.5% |
| 3483850 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.53 | 42.0 | 3.86e-01 | 100.0% | 67.0% |
| 2533026 | 304.159.1.1 ↗ | a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › Lant_dehydr_C | 0.53 | 45.0 | 4.04e-01 | 100.0% | 67.0% |
| 5039535 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.53 | 44.0 | 4.30e-01 | 100.0% | 88.2% |
| 4443601 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.52 | 43.0 | 4.19e-01 | 94.5% | 83.5% |
| 3973625 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.52 | 43.0 | 4.09e-01 | 100.0% | 80.0% |
| 4934098 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.52 | 45.0 | 4.35e-01 | 100.0% | 85.9% |
| 4954520 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.52 | 44.0 | 4.29e-01 | 100.0% | 88.7% |
| 4985071 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.52 | 45.0 | 4.14e-01 | 100.0% | 73.7% |
| 4048122 | 304.9.1.71 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SNU71_RBD | 0.52 | 44.0 | 3.75e-01 | 100.0% | 80.8% |
| 4386736 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.52 | 42.0 | 3.96e-01 | 100.0% | 73.1% |
| 4540833 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.52 | 43.0 | 4.11e-01 | 94.5% | 85.9% |
| 3215882 | 304.8.1.72 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › SCVP | 0.52 | 42.0 | 4.03e-01 | 100.0% | 78.9% |
| 4026350 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.52 | 44.0 | 4.17e-01 | 98.6% | 95.6% |
| 4024174 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 43.0 | 2.96e-01 | 100.0% | 42.0% |
| 3999969 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.51 | 44.0 | 4.09e-01 | 100.0% | 81.1% |
| 3511024 | 304.28.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran | 0.51 | 42.0 | 3.94e-01 | 100.0% | 76.0% |
| 3227174 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 43.0 | 4.13e-01 | 100.0% | 81.1% |
| 4959193 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.51 | 43.0 | 4.17e-01 | 98.6% | 88.2% |
| 4972873 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.51 | 41.0 | 4.07e-01 | 100.0% | 88.0% |
| 4679172 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.50 | 42.0 | 4.10e-01 | 98.6% | 86.3% |
D2
high
residues 1518-1626
Domain cluster:
rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00080__D2-110
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3obqA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.58 | 37.0 | 3.37e-01 | 72.5% | 49.6% |
| 2avxA00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.53 | 39.0 | 3.40e-01 | 77.1% | 92.4% |
| 2f7lA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.52 | 32.0 | 3.47e-01 | 95.4% | 76.5% |
D3
medium
residues 3-73
D4
medium
residues 223-273_353-399
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kcaA03 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.64 | 48.0 | 4.85e-01 | 78.6% | 99.0% |
| 3p51A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.63 | 54.0 | 4.72e-01 | 93.9% | 76.6% |
| 6grrB01 | 3.30.457.10 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain | 0.63 | 46.0 | 4.96e-01 | 92.9% | 96.2% |
| 2plgA01 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.60 | 53.0 | 4.87e-01 | 100.0% | 94.7% |
| 4bs9A05 | 3.30.160.660 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 46.0 | 4.41e-01 | 99.0% | 71.1% |
| 3k1lA01 | 3.30.457.40 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.60 | 51.0 | 5.31e-01 | 96.9% | 100.0% |
| 1v2bB00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.59 | 42.0 | 3.68e-01 | 74.5% | 58.9% |
| 4c47A01 | 2.60.40.1620 | Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like | 0.58 | 43.0 | 4.08e-01 | 79.6% | 100.0% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 42.0 | 4.62e-01 | 86.7% | 100.0% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.57 | 45.0 | 4.64e-01 | 88.8% | 91.2% |
| 2lqvA00 | 3.10.450.300 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein | 0.56 | 41.0 | 4.10e-01 | 87.8% | 75.8% |
| 4aw8A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 46.0 | 3.77e-01 | 90.8% | 78.5% |
| 4ikcA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.55 | 42.0 | 3.06e-01 | 80.6% | 42.3% |
| 4u13A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 45.0 | 4.36e-01 | 88.8% | 95.4% |
| 2rsxA00 | 3.10.450.420 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 45.0 | 3.89e-01 | 89.8% | 95.0% |
| 1wnhA01 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 45.0 | 4.56e-01 | 100.0% | 90.0% |
| 3obaA05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.54 | 48.0 | 3.43e-01 | 100.0% | 90.8% |
| 4qa8A00 | 2.50.20.20 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.53 | 44.0 | 3.49e-01 | 91.8% | 88.6% |
| 3ff2A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 44.0 | 4.19e-01 | 91.8% | 95.7% |
| 3g8zA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 45.0 | 4.18e-01 | 98.0% | 94.5% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.51 | 44.0 | 4.33e-01 | 98.0% | 88.1% |
| 3wasA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 41.0 | 2.81e-01 | 89.8% | 67.4% |
| 7pkwA01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 40.0 | 4.02e-01 | 87.8% | 86.4% |
| 4gp3A03 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.50 | 37.0 | 3.52e-01 | 79.6% | 95.9% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3273079 | 9.4.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains | 0.66 | 53.0 | 5.52e-01 | 92.9% | 95.5% |
| 4126991 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.65 | 48.0 | 4.98e-01 | 88.8% | 84.4% |
| 1033396 | 243.4.1.1 ↗ | a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › DsbC_N | 0.63 | 35.0 | 3.91e-01 | 91.8% | 69.3% |
| 4456367 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.63 | 48.0 | 4.47e-01 | 82.7% | 76.0% |
| 3676249 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.62 | 55.0 | 5.31e-01 | 100.0% | 96.4% |
| 3298515 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.61 | 55.0 | 5.22e-01 | 100.0% | 93.9% |
| 2648443 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.61 | 45.0 | 4.66e-01 | 91.8% | 81.7% |
| 3284847 | 243.1.1.80 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 | 0.61 | 53.0 | 5.18e-01 | 94.9% | 96.3% |
| 3271023 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.61 | 53.0 | 4.46e-01 | 98.0% | 97.1% |
| 3806422 | 247.1.1.38 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C | 0.61 | 40.0 | 4.21e-01 | 87.8% | 76.5% |
| 3788566 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.60 | 54.0 | 4.70e-01 | 100.0% | 83.3% |
| 3811678 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.60 | 52.0 | 5.11e-01 | 95.9% | 92.6% |
| 4268775 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.60 | 52.0 | 4.86e-01 | 99.0% | 92.8% |
| 4640527 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.60 | 52.0 | 4.82e-01 | 98.0% | 87.2% |
| 3246974 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.60 | 44.0 | 4.41e-01 | 90.8% | 77.0% |
| 3306545 | 331.2.1.8 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › CPSF73-100_C | 0.59 | 40.0 | 4.22e-01 | 87.8% | 78.8% |
| 4269457 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.59 | 51.0 | 4.68e-01 | 99.0% | 84.3% |
| 3744814 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.59 | 48.0 | 5.02e-01 | 93.9% | 100.0% |
| 3326519 | 331.23.1.7 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C | 0.59 | 39.0 | 4.29e-01 | 85.7% | 85.0% |
| 3685150 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.58 | 50.0 | 4.34e-01 | 99.0% | 83.6% |
| 3177804 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.58 | 51.0 | 4.40e-01 | 100.0% | 78.1% |
| 3615641 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.58 | 41.0 | 4.35e-01 | 89.8% | 85.9% |
| 4193772 | 331.1.1.13 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C | 0.58 | 39.0 | 4.19e-01 | 85.7% | 81.2% |
| 4984221 | 5.1.8.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 | 0.57 | 38.0 | 3.33e-01 | 88.8% | 45.5% |
| 3958869 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.57 | 42.0 | 3.30e-01 | 79.6% | 66.4% |
| 4026006 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 42.0 | 4.50e-01 | 91.8% | 97.5% |
| 5000965 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.56 | 46.0 | 4.78e-01 | 100.0% | 96.7% |
| 3397960 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.56 | 43.0 | 3.08e-01 | 80.6% | 41.8% |
| 4427813 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.56 | 48.0 | 4.76e-01 | 99.0% | 89.5% |
| 3610972 | 330.1.1.22 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 | 0.56 | 47.0 | 4.28e-01 | 92.9% | 86.9% |
| 3860966 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.55 | 42.0 | 2.93e-01 | 80.6% | 39.7% |
| 2597134 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.55 | 42.0 | 2.90e-01 | 79.6% | 38.2% |
| 4426204 | 331.23.1.7 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C | 0.55 | 39.0 | 4.16e-01 | 83.7% | 85.9% |
| 3970136 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.55 | 48.0 | 4.75e-01 | 100.0% | 93.3% |
| 3446652 | 331.3.1.40 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF1997 | 0.55 | 47.0 | 3.89e-01 | 96.9% | 64.3% |
| 4269649 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.55 | 47.0 | 4.59e-01 | 99.0% | 87.3% |
| 3581140 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.54 | 40.0 | 2.95e-01 | 80.6% | 45.4% |
| 3720660 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 37.0 | 4.15e-01 | 74.5% | 96.0% |
| 4946710 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.51 | 35.0 | 3.83e-01 | 90.8% | 92.0% |
| 5009939 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 39.0 | 3.86e-01 | 81.6% | 77.1% |
D5
medium
residues 274-352
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1f9qD00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.68 | 43.0 | 4.66e-01 | 84.8% | 75.8% |
| 3a0oA03 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.68 | 33.0 | 2.25e-01 | 72.2% | 12.8% |
| 5cbeE00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.66 | 37.0 | 4.04e-01 | 75.9% | 67.2% |
| 3teeA02 | 2.30.30.760 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 31.0 | 3.26e-01 | 72.2% | 47.9% |
| 1e0bA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 36.0 | 3.97e-01 | 78.5% | 72.1% |
| 1nr4C00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 39.0 | 4.17e-01 | 84.8% | 74.2% |
| 1icwB00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 41.0 | 4.43e-01 | 86.1% | 81.8% |
| 2hczX02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.60 | 42.0 | 3.82e-01 | 72.2% | 65.4% |
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 38.0 | 4.05e-01 | 83.5% | 74.6% |
| 1rl2A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 34.0 | 3.88e-01 | 79.7% | 76.8% |
| 4oijA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 36.0 | 3.82e-01 | 83.5% | 67.6% |
| 5umsA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 39.0 | 3.62e-01 | 82.3% | 52.9% |
| 4jcwA02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.59 | 41.0 | 3.93e-01 | 72.2% | 68.9% |
| 2mcaA00 | 2.60.40.2890 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF5300 | 0.58 | 41.0 | 3.81e-01 | 74.7% | 66.0% |
| 3pvlA04 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 40.0 | 3.70e-01 | 91.1% | 56.6% |
| 1d3bC00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 35.0 | 3.69e-01 | 81.0% | 67.6% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 36.0 | 4.24e-01 | 82.3% | 92.7% |
| 2z9iC01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 43.0 | 4.14e-01 | 82.3% | 87.0% |
| 4ld1A00 | 2.60.450.20 | Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › | 0.56 | 32.0 | 2.47e-01 | 70.9% | 28.7% |
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 33.0 | 3.99e-01 | 81.0% | 93.9% |
| 4ic6C01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 43.0 | 3.87e-01 | 82.3% | 83.6% |
| 6muwH00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.56 | 38.0 | 2.94e-01 | 70.9% | 94.9% |
| 1hx6B01 | 2.70.9.30 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Viral coat protein p3 | 0.56 | 41.0 | 3.00e-01 | 79.7% | 64.8% |
| 3d30A02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.56 | 38.0 | 3.65e-01 | 72.2% | 70.2% |
| 1gutA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.55 | 33.0 | 3.50e-01 | 78.5% | 68.7% |
| 3wdhA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 37.0 | 3.54e-01 | 70.9% | 64.6% |
| 1b9mA03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.53 | 32.0 | 3.34e-01 | 79.7% | 64.8% |
| 1vw4400 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 44.0 | 3.60e-01 | 88.6% | 63.8% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 33.0 | 3.65e-01 | 77.2% | 82.3% |
| 4i8iA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.52 | 44.0 | 3.11e-01 | 96.2% | 84.2% |
| 3ec3A02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 37.0 | 3.24e-01 | 75.9% | 79.8% |
| 1lm4A00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.51 | 40.0 | 3.09e-01 | 87.3% | 70.0% |
| 2wweA01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 37.0 | 3.38e-01 | 77.2% | 88.5% |
| 2eigA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 41.0 | 3.07e-01 | 93.7% | 63.5% |
| 4hh3A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 37.0 | 3.32e-01 | 77.2% | 57.0% |
| 3c96A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 34.0 | 2.67e-01 | 82.3% | 32.1% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3553983 | 4.1.1.233 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N | 0.66 | 34.0 | 3.83e-01 | 78.5% | 63.3% |
| 4014812 | 4.8.1.2 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow | 0.65 | 39.0 | 4.40e-01 | 81.0% | 78.3% |
| 3364309 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.65 | 42.0 | 3.50e-01 | 82.3% | 39.2% |
| 3915693 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.65 | 38.0 | 4.19e-01 | 77.2% | 72.3% |
| 3439990 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.63 | 42.0 | 4.06e-01 | 86.1% | 60.0% |
| 4186983 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.63 | 37.0 | 3.83e-01 | 79.7% | 61.3% |
| 3554026 | 4.1.1.233 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N | 0.63 | 33.0 | 3.73e-01 | 78.5% | 65.0% |
| 3764432 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 33.0 | 3.60e-01 | 79.7% | 60.0% |
| 3901117 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.62 | 33.0 | 2.55e-01 | 79.7% | 21.7% |
| 3731161 | 220.1.1.44 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N | 0.61 | 41.0 | 4.31e-01 | 83.5% | 75.7% |
| 3264879 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 35.0 | 3.72e-01 | 87.3% | 62.9% |
| 4994410 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 41.0 | 4.03e-01 | 78.5% | 64.7% |
| 3694693 | 4.8.1.2 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow | 0.61 | 37.0 | 4.00e-01 | 81.0% | 73.8% |
| 3010132 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 41.0 | 3.93e-01 | 70.9% | 66.7% |
| 4929088 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.60 | 43.0 | 4.36e-01 | 75.9% | 86.3% |
| 3247727 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 41.0 | 3.39e-01 | 91.1% | 40.7% |
| 3654790 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 37.0 | 4.11e-01 | 81.0% | 83.3% |
| 3518475 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 31.0 | 3.34e-01 | 78.5% | 55.7% |
| 3493556 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 39.0 | 3.45e-01 | 91.1% | 48.2% |
| 4602962 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.59 | 33.0 | 2.72e-01 | 79.7% | 28.7% |
| 3495981 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.58 | 37.0 | 2.94e-01 | 83.5% | 31.2% |
| 4557124 | 4.6.1.6 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM | 0.58 | 36.0 | 3.83e-01 | 81.0% | 70.0% |
| 4072405 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.57 | 37.0 | 3.83e-01 | 84.8% | 69.3% |
| 3277433 | 2485.1.1.19 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 | 0.56 | 43.0 | 3.77e-01 | 81.0% | 73.0% |
| 4065841 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.56 | 39.0 | 3.64e-01 | 81.0% | 58.9% |
| 3458479 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.56 | 42.0 | 3.51e-01 | 78.5% | 76.2% |
| 4468322 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.55 | 40.0 | 3.66e-01 | 82.3% | 59.0% |
| 4509362 | 12.3.1.24 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas | 0.55 | 41.0 | 2.86e-01 | 82.3% | 76.3% |
| 5041236 | 375.13.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt | 0.55 | 32.0 | 3.77e-01 | 73.4% | 83.6% |
| 5044642 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.53 | 44.0 | 3.09e-01 | 91.1% | 89.0% |
| 4937035 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.53 | 41.0 | 3.33e-01 | 92.4% | 44.8% |
| 3204420 | 76.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I | 0.52 | 35.0 | 2.78e-01 | 94.9% | 32.0% |
| 3994195 | 2485.1.1.35 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 | 0.51 | 39.0 | 3.68e-01 | 79.7% | 89.5% |
| 3630115 | 2485.1.1.35 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 | 0.51 | 39.0 | 3.65e-01 | 79.7% | 89.5% |
| 3794092 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 38.0 | 3.52e-01 | 79.7% | 81.0% |
| 3481588 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.51 | 35.0 | 2.92e-01 | 72.2% | 81.4% |
| 3878539 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 36.0 | 2.97e-01 | 74.7% | 71.3% |
D6
medium
residues 448-564
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.69 | 33.0 | 3.73e-01 | 99.1% | 57.1% |
| 3ieyA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.61 | 29.0 | 3.14e-01 | 99.1% | 49.0% |
| 4ftfA00 | 3.30.300.250 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.58 | 33.0 | 3.41e-01 | 100.0% | 58.7% |
| 1ewqB01 | 3.40.1170.10 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I | 0.53 | 38.0 | 3.85e-01 | 100.0% | 74.6% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 141372 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.69 | 33.0 | 3.73e-01 | 99.1% | 57.1% |
| 2142345 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.67 | 33.0 | 3.63e-01 | 86.3% | 57.0% |
| 3605286 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.60 | 33.0 | 3.51e-01 | 93.2% | 60.0% |
| 3380863 | 2007.2.3.9 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase | 0.58 | 45.0 | 2.81e-01 | 83.8% | 64.5% |
| 3601501 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.54 | 48.0 | 2.79e-01 | 100.0% | 19.0% |
| 3605264 | 2007.2.3.9 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase | 0.51 | 45.0 | 3.28e-01 | 100.0% | 57.7% |
| 3717848 | 2007.2.3.9 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase | 0.51 | 44.0 | 2.78e-01 | 100.0% | 26.9% |
| 3558357 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.51 | 39.0 | 2.84e-01 | 81.2% | 96.7% |
D7
medium
residues 734-832
D8
medium
residues 833-895
D9
medium
residues 1001-1092
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x4qA01 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.66 | 38.0 | 4.29e-01 | 79.3% | 74.6% |
| 2kebA00 | 1.10.8.530 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA polymerase alpha-primase, subunit B, N-terminal domain | 0.62 | 43.0 | 4.62e-01 | 80.4% | 85.9% |
| 5fq4A00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 47.0 | 3.03e-01 | 85.9% | 81.9% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.59 | 48.0 | 5.01e-01 | 94.6% | 98.8% |
| 3sp1A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.59 | 45.0 | 3.24e-01 | 80.4% | 47.2% |
| 7w5gA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.59 | 48.0 | 3.26e-01 | 96.7% | 23.3% |
| 6x6uA02 | 1.10.569.10 | Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 | 0.59 | 46.0 | 3.54e-01 | 83.7% | 43.5% |
| 2p1aB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.58 | 41.0 | 3.49e-01 | 72.8% | 95.2% |
| 1f0jA00 | 1.10.1300.10 | Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain | 0.56 | 42.0 | 2.85e-01 | 80.4% | 49.3% |
| 1b25A02 | 1.10.569.10 | Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 | 0.56 | 43.0 | 3.52e-01 | 83.7% | 48.9% |
| 6h9dA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.54 | 44.0 | 3.77e-01 | 89.1% | 64.2% |
| 5ddtA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.53 | 41.0 | 3.08e-01 | 81.5% | 95.3% |
| 4dsfA04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.53 | 37.0 | 3.48e-01 | 70.7% | 88.2% |
| 1hw1A02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.53 | 40.0 | 3.45e-01 | 81.5% | 70.9% |
| 1yhtA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 40.0 | 2.74e-01 | 82.6% | 97.4% |
| 2o7iA03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.51 | 39.0 | 2.86e-01 | 82.6% | 97.2% |
| 2r6iA02 | 1.10.3580.10 | Mainly Alpha › Orthogonal Bundle › ATP12-like fold › ATP12 ATPase | 0.51 | 38.0 | 3.23e-01 | 83.7% | 65.7% |
| 1t3aA00 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.51 | 43.0 | 2.93e-01 | 100.0% | 62.3% |
| 1ou5A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.51 | 34.0 | 3.01e-01 | 88.0% | 45.0% |
| 4krdB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.50 | 38.0 | 2.97e-01 | 79.3% | 43.7% |
| 4a15A03 | 1.10.275.40 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › | 0.50 | 34.0 | 2.98e-01 | 70.7% | 66.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4002271 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.69 | 50.0 | 3.35e-01 | 77.2% | 35.3% |
| 4933113 | 101.1.9.150 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Cas12f1-like_TNB | 0.62 | 44.0 | 4.18e-01 | 82.6% | 61.8% |
| 3980101 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.59 | 48.0 | 3.56e-01 | 89.1% | 89.8% |
| 3196009 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.56 | 47.0 | 3.68e-01 | 92.4% | 95.5% |
| 3192331 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.56 | 47.0 | 3.06e-01 | 96.7% | 38.1% |
| 3271984 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.52 | 39.0 | 3.39e-01 | 79.3% | 83.4% |
| 3470595 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.52 | 38.0 | 2.96e-01 | 77.2% | 59.0% |
| 4029624 | 314.1.1.1 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 | 0.51 | 39.0 | 2.59e-01 | 82.6% | 66.7% |
| 3173200 | 101.1.1.8 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › TEA | 0.51 | 37.0 | 3.51e-01 | 77.2% | 100.0% |
D10
medium
residues 1110-1173
D11
medium
residues 1403-1454