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SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00312
Bact-VirSR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00312
Identity
- Kingdom:
- phage
Quality
47.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 508-637
Domain cluster:
rep: IMGVR_UViG_3300025326_000018-3300025326-Ga0209342_1000012772__D13-110
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 32.0 | 4.27e-01 | 83.8% | 76.8% |
| 4h75A00 | 2.80.10.70 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty | 0.65 | 35.0 | 3.05e-01 | 84.6% | 34.2% |
| 2yrvA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 36.0 | 3.84e-01 | 86.9% | 61.9% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 30.0 | 4.25e-01 | 78.5% | 95.2% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 35.0 | 4.56e-01 | 83.8% | 98.6% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.63 | 39.0 | 4.30e-01 | 89.2% | 76.9% |
| 2ckkA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 30.0 | 4.13e-01 | 81.5% | 100.0% |
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 32.0 | 4.27e-01 | 100.0% | 100.0% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 32.0 | 4.08e-01 | 83.8% | 90.8% |
| 3k6yA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 34.0 | 3.69e-01 | 85.4% | 68.2% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 38.0 | 4.10e-01 | 87.7% | 78.7% |
| 3kl9A02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.56 | 28.0 | 3.61e-01 | 84.6% | 83.8% |
| 1o54A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.56 | 30.0 | 3.87e-01 | 84.6% | 93.1% |
| 1yloE02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.56 | 29.0 | 3.53e-01 | 83.8% | 77.4% |
| 4he6A00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 35.0 | 4.05e-01 | 85.4% | 93.3% |
| 4zciA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 36.0 | 3.97e-01 | 85.4% | 89.1% |
| 1fhoA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 33.0 | 3.50e-01 | 83.1% | 70.6% |
| 1whlA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.52 | 36.0 | 4.11e-01 | 88.5% | 97.9% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4120629 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.69 | 40.0 | 5.15e-01 | 91.5% | 100.0% |
| 3913782 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 34.0 | 4.71e-01 | 81.5% | 96.9% |
| 3502290 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 30.0 | 4.36e-01 | 83.1% | 91.7% |
| 3774692 | 4.1.1.31 ↗ | beta barrels › SH3 › SH3 › SH3 › Spin-Ssty | 0.68 | 40.0 | 4.87e-01 | 90.0% | 93.8% |
| 3441143 | 4.1.1.94 ↗ | beta barrels › SH3 › SH3 › SH3 › SAWADEE | 0.62 | 36.0 | 4.02e-01 | 86.2% | 73.0% |
| 3519774 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 39.0 | 4.32e-01 | 97.7% | 79.0% |
| 4196537 | 4.1.1.52 ↗ | beta barrels › SH3 › SH3 › SH3 › ZapC_C | 0.59 | 31.0 | 3.93e-01 | 83.8% | 86.7% |
| 3183093 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 38.0 | 3.75e-01 | 86.9% | 63.6% |
| 3363136 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.55 | 37.0 | 3.91e-01 | 83.1% | 75.8% |
| 2137682 | 1.1.5.32 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZNR | 0.53 | 29.0 | 3.17e-01 | 82.3% | 63.7% |
| 3971461 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.53 | 35.0 | 4.10e-01 | 86.2% | 96.7% |
| 3873627 | 4.1.1.354 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 | 0.53 | 35.0 | 3.74e-01 | 84.6% | 76.5% |
| 3166182 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.53 | 35.0 | 4.04e-01 | 86.9% | 96.7% |
| 159 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.51 | 26.0 | 3.05e-01 | 84.6% | 66.7% |
| 3949052 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 34.0 | 3.95e-01 | 88.5% | 97.8% |
| 3184235 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.50 | 40.0 | 3.84e-01 | 90.0% | 73.8% |
D2
medium
residues 402-483
D3
medium
residues 1039-1101
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ibdA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.67 | 53.0 | 4.06e-01 | 87.3% | 55.8% |
| 1elkA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.66 | 54.0 | 4.14e-01 | 93.7% | 49.7% |
| 2rfqB01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.62 | 51.0 | 4.34e-01 | 93.7% | 82.6% |
| 1sz9C00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.62 | 51.0 | 4.13e-01 | 98.4% | 51.4% |
| 2uv8A04 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 52.0 | 3.12e-01 | 100.0% | 38.5% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.61 | 47.0 | 4.00e-01 | 87.3% | 85.6% |
| 1sqmA04 | 1.25.40.320 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Peptidase M1, leukotriene A4 hydrolase/aminopeptidase C-terminal domain | 0.61 | 52.0 | 3.99e-01 | 100.0% | 41.6% |
| 2gomA00 | 1.10.10.1270 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV | 0.55 | 42.0 | 4.33e-01 | 93.7% | 91.8% |
| 7ewfB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 3.77e-01 | 82.5% | 85.3% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3453777 | 604.5.1.37 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › DUF679 | 0.72 | 55.0 | 4.52e-01 | 82.5% | 67.8% |
| 3331493 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.65 | 54.0 | 4.01e-01 | 95.2% | 35.4% |
| 3740693 | 101.1.21.1 ↗ | alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N | 0.65 | 53.0 | 3.11e-01 | 95.2% | 11.0% |
| 4577554 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.61 | 48.0 | 4.23e-01 | 87.3% | 77.9% |
| 3208423 | 109.3.1.168 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_5 | 0.61 | 48.0 | 2.82e-01 | 92.1% | 10.3% |
| 3678716 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.59 | 47.0 | 4.63e-01 | 92.1% | 94.3% |
| 4285785 | 7579.1.1.44 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 | 0.57 | 50.0 | 3.29e-01 | 100.0% | 65.1% |
| 153589 | 191.1.1.29 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_27 | 0.56 | 39.0 | 3.42e-01 | 74.6% | 68.6% |
| 5025549 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 35.0 | 3.56e-01 | 74.6% | 78.5% |
D4
medium
residues 1102-1241
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.59 | 26.0 | 3.80e-01 | 86.4% | 95.0% |
| 2v5yA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 31.0 | 3.56e-01 | 75.0% | 73.2% |
| 4hsaF02 | 2.60.40.2150 | Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 | 0.56 | 32.0 | 3.66e-01 | 72.9% | 74.3% |
| 3hn3A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 30.0 | 3.41e-01 | 76.4% | 73.1% |
| 3sluB01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 31.0 | 3.78e-01 | 79.3% | 94.5% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5082037 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.52 | 26.0 | 3.09e-01 | 86.4% | 68.1% |
| 4430862 | 9.28.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Barrel domain in extracellular arabinanase › Barrel domain in extracellular arabinanase › GH43_C | 0.51 | 27.0 | 3.07e-01 | 81.4% | 64.8% |
| 3740135 | 4143.1.1.7 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › PF25904 | 0.50 | 27.0 | 3.09e-01 | 75.7% | 70.5% |