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SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00316
Bact-VirSR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00316
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-73
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6nazA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 35.0 | 2.71e-01 | 97.0% | 28.7% |
| 3tw8A01 | 3.30.450.200 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module | 0.51 | 41.0 | 3.40e-01 | 97.0% | 50.7% |
| 2d0bA01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.51 | 35.0 | 3.21e-01 | 72.7% | 73.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3551723 | 223.2.1.4 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN | 0.54 | 43.0 | 3.38e-01 | 92.4% | 43.8% |
| 3674411 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.53 | 36.0 | 3.83e-01 | 71.2% | 98.2% |
| 3894488 | 223.2.1.6 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN | 0.52 | 33.0 | 2.93e-01 | 98.5% | 41.0% |
| 4944829 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.51 | 33.0 | 3.72e-01 | 98.5% | 100.0% |
D2
high
residues 78-181
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01844.30 best | HNH | 34.4 | 2.80e-08 | 42.3% | 72.3% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ossD00 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.55 | 37.0 | 3.30e-01 | 84.6% | 45.9% |
| 1m08A00 | 3.90.540.10 | Alpha Beta › Alpha-Beta Complex › Colicin E7 immunity protein; Chain B, fragment: Endonuclease domain › Colicin/pyocin, DNase domain | 0.53 | 47.0 | 4.35e-01 | 97.1% | 94.7% |
| 2bbrA02 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.51 | 38.0 | 3.86e-01 | 78.8% | 97.0% |
| 1o0wA01 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.50 | 37.0 | 3.24e-01 | 76.9% | 57.1% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5060915 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.77 | 47.0 | 5.41e-01 | 99.0% | 84.0% |
| 3905981 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.58 | 54.0 | 4.96e-01 | 100.0% | 80.8% |
| 4448977 | 378.1.1.15 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Col-Pyo_DNase | 0.53 | 47.0 | 4.23e-01 | 96.2% | 88.6% |
| 3264027 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 33.0 | 3.49e-01 | 90.4% | 72.2% |
| 4674797 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.51 | 38.0 | 3.44e-01 | 80.8% | 55.3% |