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SR-VP_2-4_scaffold_141_5652861_prodigal-single.1__X__X__00021
Bact-VirSR-VP_2-4_scaffold_141_5652861_prodigal-single.1__X__X__00021
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 40-138
Domain cluster:
rep: rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00033__D3-92
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tw6D02 | 3.10.600.10 | Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain | 0.64 | 33.0 | 3.68e-01 | 81.8% | 63.2% |
| 2xu8A00 | 3.90.70.190 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Domain of unknown function (DUF5086) | 0.63 | 41.0 | 3.88e-01 | 92.9% | 55.2% |
| 3gocA00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.59 | 53.0 | 4.05e-01 | 100.0% | 81.1% |
| 1fx3B00 | 3.10.420.10 | Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like | 0.58 | 40.0 | 3.48e-01 | 71.7% | 53.0% |
| 2w35A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.57 | 51.0 | 3.93e-01 | 98.0% | 82.1% |
| 4ibnA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 50.0 | 4.10e-01 | 100.0% | 80.3% |
| 4k7rA02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.54 | 36.0 | 3.95e-01 | 79.8% | 87.0% |
| 3ga2A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.53 | 47.0 | 3.63e-01 | 100.0% | 82.2% |
| 1vl7A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 39.0 | 3.50e-01 | 76.8% | 91.9% |
| 2fg9A01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 39.0 | 3.34e-01 | 77.8% | 82.4% |
| 3o2uA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.52 | 39.0 | 3.32e-01 | 78.8% | 89.5% |
| 2gu0A02 | 3.30.428.20 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain | 0.50 | 29.0 | 2.49e-01 | 89.9% | 33.3% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3285688 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.58 | 42.0 | 4.31e-01 | 74.7% | 81.1% |
| 5050551 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.58 | 42.0 | 3.67e-01 | 74.7% | 96.7% |
| 3703649 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.58 | 31.0 | 3.39e-01 | 76.8% | 61.3% |
| 3969815 | 4210.1.1.5 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › PA4575 | 0.57 | 44.0 | 4.46e-01 | 100.0% | 82.0% |
| 3258377 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.54 | 30.0 | 3.19e-01 | 71.7% | 57.8% |
| 3497884 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 35.0 | 3.53e-01 | 73.7% | 62.9% |
| 3278704 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.53 | 35.0 | 3.83e-01 | 96.0% | 83.7% |
| 4025881 | 101.1.12.3 ↗ | alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N | 0.53 | 41.0 | 3.49e-01 | 82.8% | 73.3% |
| 3612141 | 719.1.1.5 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 | 0.52 | 38.0 | 3.40e-01 | 75.8% | 91.3% |
| 3324317 | 5.1.3.144 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like | 0.52 | 43.0 | 2.93e-01 | 94.9% | 26.3% |
| 3899230 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.50 | 29.0 | 2.97e-01 | 70.7% | 55.0% |