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SR-VP_2-4_scaffold_141_5652861_prodigal-single.1__X__X__00033
Bact-VirSR-VP_2-4_scaffold_141_5652861_prodigal-single.1__X__X__00033
Identity
- Kingdom:
- phage
Quality
77.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 40-132
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bkfA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 41.0 | 4.33e-01 | 97.8% | 91.6% |
| 1oeyL00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 42.0 | 4.19e-01 | 96.8% | 82.7% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.51 | 31.0 | 3.55e-01 | 80.6% | 90.2% |
| 4ii2A06 | 3.10.290.60 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-activating enzyme E1, UFD domain | 0.51 | 39.0 | 3.96e-01 | 88.2% | 84.0% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.50 | 34.0 | 3.89e-01 | 78.5% | 100.0% |
| 3fmaA00 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.50 | 35.0 | 3.71e-01 | 91.4% | 82.7% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3483881 | 4261.1.1.2 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › BK_channel_a | 0.66 | 46.0 | 4.36e-01 | 100.0% | 59.1% |
| 5055312 | 221.1.3.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Sulfite oxidase, middle catalytic domain | 0.52 | 44.0 | 3.82e-01 | 96.8% | 74.8% |
| 4052065 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.51 | 35.0 | 3.16e-01 | 98.9% | 47.1% |
| 3698542 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.51 | 40.0 | 3.19e-01 | 100.0% | 39.0% |
| 5022263 | 322.1.1.2 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › 3H | 0.51 | 42.0 | 4.01e-01 | 100.0% | 76.4% |